CLASS

BitCodec

in htsjdk.samtools.cram.encoding

Fully qualified name:	htsjdk.samtools.cram.encoding.BitCodec
Containing JAR files:	JAR htsjdk-2.15.1.jar in com/github/samtools/htsjdk/2.15.1 Latest JAR htsjdk-2.15.0.jar in com/github/samtools/htsjdk/2.15.0 JAR htsjdk-2.14.3.jar in com/github/samtools/htsjdk/2.14.3 JAR htsjdk-2.14.2.jar in com/github/samtools/htsjdk/2.14.2 JAR htsjdk-2.14.1.jar in com/github/samtools/htsjdk/2.14.1 JAR htsjdk-2.14.0.jar in com/github/samtools/htsjdk/2.14.0 JAR htsjdk-2.13.2.jar in com/github/samtools/htsjdk/2.13.2 JAR htsjdk-2.13.1.jar in com/github/samtools/htsjdk/2.13.1 JAR htsjdk-2.13.0.jar in com/github/samtools/htsjdk/2.13.0 JAR htsjdk-2.12.0.jar in com/github/samtools/htsjdk/2.12.0

	JAR htsjdk-2.11.0.jar in com/github/samtools/htsjdk/2.11.0 JAR htsjdk-2.10.1.jar in com/github/samtools/htsjdk/2.10.1 JAR htsjdk-2.10.0.jar in com/github/samtools/htsjdk/2.10.0 JAR htsjdk-2.9.1.jar in com/github/samtools/htsjdk/2.9.1 JAR htsjdk-2.9.0.jar in com/github/samtools/htsjdk/2.9.0 JAR htsjdk-2.8.1.jar in com/github/samtools/htsjdk/2.8.1 JAR htsjdk-2.8.0.jar in com/github/samtools/htsjdk/2.8.0 JAR htsjdk-2.7.0.jar in com/github/samtools/htsjdk/2.7.0 JAR htsjdk-2.6.1.jar in com/github/samtools/htsjdk/2.6.1 JAR htsjdk-2.6.0.jar in com/github/samtools/htsjdk/2.6.0 JAR htsjdk-2.5.1.jar in com/github/samtools/htsjdk/2.5.1 JAR htsjdk-2.5.0.jar in com/github/samtools/htsjdk/2.5.0 JAR htsjdk-2.4.1.jar in com/github/samtools/htsjdk/2.4.1 JAR htsjdk-2.4.0.jar in com/github/samtools/htsjdk/2.4.0 JAR htsjdk-2.3.0.jar in com/github/samtools/htsjdk/2.3.0 JAR htsjdk-2.2.4.jar in com/github/samtools/htsjdk/2.2.4 JAR htsjdk-2.2.3.jar in com/github/samtools/htsjdk/2.2.3 JAR htsjdk-2.2.2.jar in com/github/samtools/htsjdk/2.2.2 JAR htsjdk-2.2.1.jar in com/github/samtools/htsjdk/2.2.1 JAR htsjdk-2.2.0.jar in com/github/samtools/htsjdk/2.2.0 JAR htsjdk-2.1.1.jar in com/github/samtools/htsjdk/2.1.1 JAR htsjdk-2.1.0.jar in com/github/samtools/htsjdk/2.1.0 JAR htsjdk-2.0.1.jar in com/github/samtools/htsjdk/2.0.1 JAR htsjdk-2.0.0.jar in com/github/samtools/htsjdk/2.0.0 JAR htsjdk-1.143.jar in com/github/samtools/htsjdk/1.143 JAR htsjdk-1.142.jar in com/github/samtools/htsjdk/1.142 JAR htsjdk-1.141.jar in com/github/samtools/htsjdk/1.141 JAR htsjdk-1.140.jar in com/github/samtools/htsjdk/1.140 JAR htsjdk-1.139.jar in com/github/samtools/htsjdk/1.139 JAR htsjdk-1.138.jar in com/github/samtools/htsjdk/1.138 JAR htsjdk-1.137.jar in com/github/samtools/htsjdk/1.137 JAR htsjdk-1.136.jar in com/github/samtools/htsjdk/1.136 JAR htsjdk-1.135.jar in com/github/samtools/htsjdk/1.135 JAR htsjdk-1.134.jar in com/github/samtools/htsjdk/1.134 JAR htsjdk-1.133.jar in com/github/samtools/htsjdk/1.133 JAR htsjdk-1.132.jar in com/github/samtools/htsjdk/1.132 JAR htsjdk-1.131.jar in com/github/samtools/htsjdk/1.131 JAR htsjdk-1.130.jar in com/github/samtools/htsjdk/1.130 JAR htsjdk-1.129.jar in com/github/samtools/htsjdk/1.129 JAR htsjdk-1.128.jar in com/github/samtools/htsjdk/1.128 JAR htsjdk_2.11-1.128.jar in com/github/samtools/htsjdk_2.11/1.128 JAR variant-spark_2.11-0.1.0-all.jar in au/csiro/aehrc/variant-spark/variant-spark_2.11/0.1.0 JAR adam-examples_2.10-0.22.0.jar in com/github/heuermh/adamexamples/adam-examples_2.10/0.22.0 Latest JAR adam-examples_2.10-0.19.0.jar in com/github/heuermh/adamexamples/adam-examples_2.10/0.19.0 JAR adam-examples_2.10-0.18.2.jar in com/github/heuermh/adamexamples/adam-examples_2.10/0.18.2 JAR adam-examples_2.10-0.18.1.jar in com/github/heuermh/adamexamples/adam-examples_2.10/0.18.1 JAR adam-examples_2.11-0.23.0.jar in com/github/heuermh/adamexamples/adam-examples_2.11/0.23.0 Latest JAR adam-examples_2.11-0.19.0.jar in com/github/heuermh/adamexamples/adam-examples_2.11/0.19.0 JAR adam-examples_2.11-0.18.2.jar in com/github/heuermh/adamexamples/adam-examples_2.11/0.18.2 JAR adam-examples_2.11-0.18.1.jar in com/github/heuermh/adamexamples/adam-examples_2.11/0.18.1 JAR google-genomics-dataflow-v1-0.8-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.8 Latest JAR google-genomics-dataflow-v1-0.7-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.7 JAR google-genomics-dataflow-v1-0.6-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.6 JAR google-genomics-dataflow-v1-0.5-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.5 JAR google-genomics-dataflow-v1-0.3-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.3 JAR google-genomics-dataflow-v1-0.2-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.2 JAR google-genomics-dataflow-v1-0.1-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1-0.1 JAR google-genomics-dataflow-v1beta2-0.21-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.21 JAR google-genomics-dataflow-v1beta2-0.20-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.20 JAR google-genomics-dataflow-v1beta2-0.19-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.19 JAR google-genomics-dataflow-v1beta2-0.18-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.18 JAR google-genomics-dataflow-v1beta2-0.17-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.17 JAR google-genomics-dataflow-v1beta2-0.16-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.16 JAR google-genomics-dataflow-v1beta2-0.15-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.15 JAR google-genomics-dataflow-v1beta2-0.14-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.14 JAR google-genomics-dataflow-v1beta2-0.11-runnable.jar in com/google/cloud/genomics/google-genomics-dataflow/v1beta2-0.11 JAR EmbedSingularityExample-0.13.0-shaded.jar in com/hubspot/EmbedSingularityExample/0.13.0 JAR SingularityService-0.13.0-shaded.jar in com/hubspot/SingularityService/0.13.0 JAR genomicsdb-0.10.2-proto-3.0.0-beta-1+90dad1af8ce0e4d-jar-with-dependencies.jar in com/intel/genomicsdb/0.10.2-proto-3.0.0-beta-1+90dad1af8ce0e4d JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+uuid-static-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+uuid-static JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+f222734d-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+f222734d JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+ed318f7e815-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+ed318f7e815 JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+ebdd81d70ca-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+ebdd81d70ca JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+e071855938-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+e071855938 JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+d8f149eef716-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+d8f149eef716 JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+b825ffa6eb47a-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+b825ffa6eb47a JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+023fbf70-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+023fbf70 JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+6d8f87d9e-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+6d8f87d9e JAR genomicsdb-0.9.2-proto-3.0.0-beta-1+3e2aa-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.2-proto-3.0.0-beta-1+3e2aa JAR genomicsdb-0.9.1-proto-3.0.0-beta-1+uuid-static-jar-with-dependencies.jar in com/intel/genomicsdb/0.9.1-proto-3.0.0-beta-1+uuid-static JAR genomicsdb-0.8.1-proto-3.0.0-beta-1+uuid-static-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-proto-3.0.0-beta-1+uuid-static JAR genomicsdb-0.8.1-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-proto-3.0.0-beta-1 JAR genomicsdb-0.8.1-ebca6e68-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-ebca6e68-proto-3.0.0-beta-1 JAR genomicsdb-0.8.1-caa697df9-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-caa697df9-proto-3.0.0-beta-1 JAR genomicsdb-0.8.1-a88557700-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-a88557700-proto-3.0.0-beta-1 JAR genomicsdb-0.8.1-a666036-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.1-a666036-proto-3.0.0-beta-1 JAR genomicsdb-0.8.0-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.8.0-proto-3.0.0-beta-1 JAR genomicsdb-0.7.0-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.7.0-proto-3.0.0-beta-1 JAR genomicsdb-0.6.4-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.6.4-proto-3.0.0-beta-1 JAR genomicsdb-0.6.3-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.6.3-proto-3.0.0-beta-1 JAR genomicsdb-0.6.2-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.6.2-proto-3.0.0-beta-1 JAR genomicsdb-0.6.1-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.6.1-proto-3.0.0-beta-1 JAR genomicsdb-0.6.0-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.6.0-proto-3.0.0-beta-1 JAR genomicsdb-0.5.0-proto-3.0.0-beta-1-jar-with-dependencies.jar in com/intel/genomicsdb/0.5.0-proto-3.0.0-beta-1 JAR genomicsdb-0.4.0-jar-with-dependencies.jar in com/intel/genomicsdb/0.4.0 Latest JAR genomicsdb-gatk4-0.4.0-jar-with-dependencies.jar in com/intel/genomicsdb-gatk4/0.4.0 JAR genomicsdb-gatk4-0.4.0-dependencies.jar in com/intel/genomicsdb-gatk4/0.4.0 JAR jannovar-cli-0.25.jar in de/charite/compbio/jannovar-cli/0.25 Latest JAR jannovar-cli-0.24.jar in de/charite/compbio/jannovar-cli/0.24 JAR jannovar-cli-0.23.jar in de/charite/compbio/jannovar-cli/0.23 JAR jannovar-cli-0.22.jar in de/charite/compbio/jannovar-cli/0.22 JAR jannovar-cli-0.21.jar in de/charite/compbio/jannovar-cli/0.21 JAR jannovar-cli-0.20.jar in de/charite/compbio/jannovar-cli/0.20 JAR jannovar-cli-0.19.jar in de/charite/compbio/jannovar-cli/0.19 JAR jannovar-cli-0.18.jar in de/charite/compbio/jannovar-cli/0.18 JAR jannovar-cli-0.17.jar in de/charite/compbio/jannovar-cli/0.17 JAR jannovar-cli-0.16.jar in de/charite/compbio/jannovar-cli/0.16 JAR jannovar-cli-0.15.jar in de/charite/compbio/jannovar-cli/0.15 JAR jannovar-cli-0.14.jar in de/charite/compbio/jannovar-cli/0.14 JAR jannovar-filter-0.16.jar in de/charite/compbio/jannovar-filter/0.16 Latest JAR jannovar-filter-0.15.jar in de/charite/compbio/jannovar-filter/0.15 JAR jannovar-filter-0.14.jar in de/charite/compbio/jannovar-filter/0.14 JAR jped-cli-0.16.jar in de/charite/compbio/jped-cli/0.16 Latest JAR jped-cli-0.15.jar in de/charite/compbio/jped-cli/0.15 JAR jped-cli-0.14.jar in de/charite/compbio/jped-cli/0.14 JAR cellTypeSpecificAlleleSpecificExpression-0.1-jar-with-dependencies.jar in nl/systemsgenetics/cellTypeSpecificAlleleSpecificExpression/0.1 JAR adam-assembly-spark2_2.10-0.22.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.10/0.22.0 Latest JAR adam-assembly-spark2_2.10-0.21.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.10/0.21.0 JAR adam-assembly-spark2_2.10-0.20.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.10/0.20.0 JAR adam-assembly-spark2_2.11-0.26.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.26.0 Latest JAR adam-assembly-spark2_2.11-0.25.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.25.0 JAR adam-assembly-spark2_2.11-0.24.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.24.0 JAR adam-assembly-spark2_2.11-0.23.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.23.0 JAR adam-assembly-spark2_2.11-0.22.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.22.0 JAR adam-assembly-spark2_2.11-0.21.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.21.0 JAR adam-assembly-spark2_2.11-0.20.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.20.0 JAR adam-assembly_2.10-0.23.0.jar in org/bdgenomics/adam/adam-assembly_2.10/0.23.0 Latest JAR adam-assembly_2.10-0.22.0.jar in org/bdgenomics/adam/adam-assembly_2.10/0.22.0 JAR adam-assembly_2.10-0.21.0.jar in org/bdgenomics/adam/adam-assembly_2.10/0.21.0 JAR adam-assembly_2.10-0.20.0.jar in org/bdgenomics/adam/adam-assembly_2.10/0.20.0 JAR adam-assembly_2.11-0.23.0.jar in org/bdgenomics/adam/adam-assembly_2.11/0.23.0 Latest JAR adam-assembly_2.11-0.22.0.jar in org/bdgenomics/adam/adam-assembly_2.11/0.22.0 JAR adam-assembly_2.11-0.21.0.jar in org/bdgenomics/adam/adam-assembly_2.11/0.21.0 JAR adam-assembly_2.11-0.20.0.jar in org/bdgenomics/adam/adam-assembly_2.11/0.20.0 JAR adam-cli_2.10-0.19.0.jar in org/bdgenomics/adam/adam-cli_2.10/0.19.0 Latest JAR adam-cli_2.10-0.18.2.jar in org/bdgenomics/adam/adam-cli_2.10/0.18.2 JAR adam-cli_2.10-0.18.1.jar in org/bdgenomics/adam/adam-cli_2.10/0.18.1 JAR adam-cli_2.10-0.18.0.jar in org/bdgenomics/adam/adam-cli_2.10/0.18.0 JAR adam-cli_2.11-0.19.0.jar in org/bdgenomics/adam/adam-cli_2.11/0.19.0 Latest JAR adam-cli_2.11-0.18.2.jar in org/bdgenomics/adam/adam-cli_2.11/0.18.2 JAR adam-cli_2.11-0.18.1.jar in org/bdgenomics/adam/adam-cli_2.11/0.18.1 JAR adam-cli_2.11-0.18.0.jar in org/bdgenomics/adam/adam-cli_2.11/0.18.0 JAR avocado-cli_2.10-0.1.0.jar in org/bdgenomics/avocado/avocado-cli_2.10/0.1.0 JAR avocado-cli_2.11-0.1.0.jar in org/bdgenomics/avocado/avocado-cli_2.11/0.1.0 JAR cannoli-assembly-spark2_2.10-0.1.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.10/0.1.0 JAR cannoli-assembly-spark2_2.11-0.4.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.4.0 Latest JAR cannoli-assembly-spark2_2.11-0.3.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.3.0 JAR cannoli-assembly-spark2_2.11-0.2.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.2.0 JAR cannoli-assembly-spark2_2.11-0.1.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.1.0 JAR cannoli-assembly_2.10-0.1.0.jar in org/bdgenomics/cannoli/cannoli-assembly_2.10/0.1.0 JAR cannoli-assembly_2.11-0.1.0.jar in org/bdgenomics/cannoli/cannoli-assembly_2.11/0.1.0 JAR deca-cli_2.11-0.2.0.jar in org/bdgenomics/deca/deca-cli_2.11/0.2.0 Latest JAR deca-cli_2.11-0.1.0.jar in org/bdgenomics/deca/deca-cli_2.11/0.1.0 JAR mango-assembly-0.0.3.jar in org/bdgenomics/mango/mango-assembly/0.0.3 Latest JAR mango-assembly-0.0.2.jar in org/bdgenomics/mango/mango-assembly/0.0.2 JAR mango-assembly-0.0.1.jar in org/bdgenomics/mango/mango-assembly/0.0.1 JAR mango-assembly-0.0.1-rc1.jar in org/bdgenomics/mango/mango-assembly/0.0.1-rc1 JAR mango-cli-0.0.2.jar in org/bdgenomics/mango/mango-cli/0.0.2 Latest JAR mango-cli-0.0.1.jar in org/bdgenomics/mango/mango-cli/0.0.1 JAR mango-cli-0.0.1-rc1.jar in org/bdgenomics/mango/mango-cli/0.0.1-rc1 JAR mango-core-0.0.2.jar in org/bdgenomics/mango/mango-core/0.0.2 Latest JAR mango-core-0.0.1.jar in org/bdgenomics/mango/mango-core/0.0.1 JAR mango-core-0.0.1-rc1.jar in org/bdgenomics/mango/mango-core/0.0.1-rc1 JAR quinine-cli_2.10-0.0.2.jar in org/bdgenomics/quinine/quinine-cli_2.10/0.0.2 JAR quinine-cli_2.11-0.0.2.jar in org/bdgenomics/quinine/quinine-cli_2.11/0.0.2 JAR genotype-1.3.2-bin-native.jar in org/campagnelab/dl/genotype/1.3.2 JAR somatic-1.3.2-bin-native.jar in org/campagnelab/dl/somatic/1.3.2 JAR dsh-bio-adam-1.0.1.jar in org/dishevelled/dsh-bio-adam/1.0.1 Latest JAR dsh-bio-adam-1.0.jar in org/dishevelled/dsh-bio-adam/1.0 JAR gweaver-bulk-import-1.7.11-jar-with-dependencies.jar in org/geneweaver/gweaver-bulk-import/1.7.11 JAR gweaver-query-engine-1.3.3-jar-with-deps-merge-services.jar in org/geneweaver/gweaver-query-engine/1.3.3 JAR gweaver-query-engine-1.2.0-jar-with-dependencies.jar in org/geneweaver/gweaver-query-engine/1.2.0 JAR gweaver-stream-io-2.9.8-jar-with-dependencies.jar in org/geneweaver/gweaver-stream-io/2.9.8 JAR genomicsdb-1.1.0.1-jar-with-dependencies.jar in org/genomicsdb/genomicsdb/1.1.0.1 JAR cli_2.11-1.2.0-M1-assembly.jar in org/hammerlab/bam/cli_2.11/1.2.0-M1 JAR cli_2.11-1.1.0-assembly.jar in org/hammerlab/bam/cli_2.11/1.1.0 Latest JAR cli_2.11-1.0.0-assembly.jar in org/hammerlab/bam/cli_2.11/1.0.0 JAR hpg-bigdata-app-0.6.0-jar-with-dependencies.jar in org/opencb/hpg-bigdata/hpg-bigdata-app/0.6.0 Latest JAR hpg-bigdata-app-0.5.1-jar-with-dependencies.jar in org/opencb/hpg-bigdata/hpg-bigdata-app/0.5.1 JAR hpg-bigdata-app-0.5.0-jar-with-dependencies.jar in org/opencb/hpg-bigdata/hpg-bigdata-app/0.5.0 JAR hpg-bigdata-app-0.5.0-jar-with-dependencies.jar in org/opencb/hpg/hpg-bigdata-app/0.5.0