CLASS

SecondaryAlignmentSkippingIterator

in htsjdk.samtools

Fully qualified name:	htsjdk.samtools.SecondaryAlignmentSkippingIterator
Containing JAR files:	JAR htsjdk-5.0.0-all.jar in com/github/samtools/htsjdk/5.0.0 Latest JAR htsjdk-5.0.0.jar in com/github/samtools/htsjdk/5.0.0 JAR htsjdk-2.20.3.jar in com/github/samtools/htsjdk/2.20.3 JAR htsjdk-2.15.1.jar in com/github/samtools/htsjdk/2.15.1 JAR htsjdk-2.15.0.jar in com/github/samtools/htsjdk/2.15.0 JAR htsjdk-2.14.3.jar in com/github/samtools/htsjdk/2.14.3 JAR htsjdk-2.14.2.jar in com/github/samtools/htsjdk/2.14.2 JAR htsjdk-2.14.1.jar in com/github/samtools/htsjdk/2.14.1 JAR htsjdk-2.14.0.jar in com/github/samtools/htsjdk/2.14.0 JAR htsjdk-2.13.2.jar in com/github/samtools/htsjdk/2.13.2

	JAR htsjdk-2.13.1.jar in com/github/samtools/htsjdk/2.13.1 JAR htsjdk-2.13.0.jar in com/github/samtools/htsjdk/2.13.0 JAR variant-spark_2.11-0.5.0-a0-dev5-all.jar in au/csiro/aehrc/variant-spark/variant-spark_2.11/0.5.0-a0-dev5 JAR variant-spark_2.11-0.4.0-all.jar in au/csiro/aehrc/variant-spark/variant-spark_2.11/0.4.0 Latest JAR variant-spark_2.12-0.5.5-all.jar in au/csiro/aehrc/variant-spark/variant-spark_2.12/0.5.5 JAR picard-3.5.0-all.jar in com/github/broadinstitute/picard/3.5.0 JAR adam-examples_2.11-0.30.0.jar in com/github/heuermh/adamexamples/adam-examples_2.11/0.30.0 JAR adam-examples_2.12-1.0.jar in com/github/heuermh/adamexamples/adam-examples_2.12/1.0 JAR adam-gfa_2.11-0.5.0.jar in com/github/heuermh/adamgfa/adam-gfa_2.11/0.5.0 JAR adam-gfa_2.12-0.8.0.jar in com/github/heuermh/adamgfa/adam-gfa_2.12/0.8.0 JAR jannovar-cli-0.41.jar in de/charite/compbio/jannovar-cli/0.41 Latest JAR jannovar-cli-0.33.jar in de/charite/compbio/jannovar-cli/0.33 JAR jannovar-cli-0.25.jar in de/charite/compbio/jannovar-cli/0.25 JAR jannovar-cli-0.24.jar in de/charite/compbio/jannovar-cli/0.24 JAR lite-bfx-spark-0.0.0-main-900fba4.jar in io/github/peterdowdy/lite-bfx-spark/0.0.0-main-900fba4 JAR lite-bfx-spark-scala_2.13-0.0.0-main-900fba4.jar in io/github/peterdowdy/lite-bfx-spark-scala_2.13/0.0.0-main-900fba4 JAR tassel-5.2.98-jar-with-dependencies.jar in net/maizegenetics/tassel/5.2.98 JAR adam-assembly-spark2_2.11-0.33.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.33.0 Latest JAR adam-assembly-spark2_2.11-0.32.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.32.0 JAR adam-assembly-spark2_2.11-0.31.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.31.0 JAR adam-assembly-spark2_2.11-0.30.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.30.0 JAR adam-assembly-spark2_2.11-0.29.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.29.0 JAR adam-assembly-spark2_2.11-0.28.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.28.0 JAR adam-assembly-spark2_2.11-0.27.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.27.0 JAR adam-assembly-spark2_2.11-0.26.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.26.0 JAR adam-assembly-spark2_2.11-0.25.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.25.0 JAR adam-assembly-spark2_2.11-0.24.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.11/0.24.0 JAR adam-assembly-spark2_2.12-0.33.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.33.0 Latest JAR adam-assembly-spark2_2.12-0.32.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.32.0 JAR adam-assembly-spark2_2.12-0.31.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.31.0 JAR adam-assembly-spark2_2.12-0.30.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.30.0 JAR adam-assembly-spark2_2.12-0.29.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.29.0 JAR adam-assembly-spark2_2.12-0.28.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.28.0 JAR adam-assembly-spark2_2.12-0.27.0.jar in org/bdgenomics/adam/adam-assembly-spark2_2.12/0.27.0 JAR adam-assembly-spark3_2.12-1.0.1.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/1.0.1 Latest JAR adam-assembly-spark3_2.12-1.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/1.0 JAR adam-assembly-spark3_2.12-0.37.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.37.0 JAR adam-assembly-spark3_2.12-0.36.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.36.0 JAR adam-assembly-spark3_2.12-0.35.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.35.0 JAR adam-assembly-spark3_2.12-0.34.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.34.0 JAR adam-assembly-spark3_2.12-0.33.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.33.0 JAR adam-assembly-spark3_2.12-0.32.0.jar in org/bdgenomics/adam/adam-assembly-spark3_2.12/0.32.0 JAR cannoli-assembly-spark2_2.11-0.11.1.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.1 Latest JAR cannoli-assembly-spark2_2.11-0.10.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.10.0 JAR cannoli-assembly-spark2_2.11-0.9.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.9.0 JAR cannoli-assembly-spark2_2.11-0.8.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.8.0 JAR cannoli-assembly-spark2_2.11-0.7.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.7.0 JAR cannoli-assembly-spark2_2.11-0.6.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.6.0 JAR cannoli-assembly-spark2_2.11-0.5.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.5.0 JAR cannoli-assembly-spark2_2.11-0.4.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.4.0 JAR cannoli-assembly-spark2_2.11-0.3.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.3.0 JAR cannoli-assembly-spark2_2.11-0.2.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.2.0 JAR cannoli-assembly-spark2_2.12-0.11.1.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.12/0.11.1 Latest JAR cannoli-assembly-spark2_2.12-0.10.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.12/0.10.0 JAR cannoli-assembly-spark2_2.12-0.9.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark2_2.12/0.9.0 JAR cannoli-assembly-spark3_2.12-1.0.1.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/1.0.1 Latest JAR cannoli-assembly-spark3_2.12-1.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/1.0 JAR cannoli-assembly-spark3_2.12-0.15.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.15.0 JAR cannoli-assembly-spark3_2.12-0.14.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.14.0 JAR cannoli-assembly-spark3_2.12-0.13.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.13.0 JAR cannoli-assembly-spark3_2.12-0.12.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.12.0 JAR cannoli-assembly-spark3_2.12-0.11.1.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.11.1 JAR cannoli-assembly-spark3_2.12-0.10.0.jar in org/bdgenomics/cannoli/cannoli-assembly-spark3_2.12/0.10.0 JAR mango-assembly-0.0.5.jar in org/bdgenomics/mango/mango-assembly/0.0.5 Latest JAR mango-assembly-0.0.3.jar in org/bdgenomics/mango/mango-assembly/0.0.3 JAR biokotlin-1.0.0-all.jar in org/biokotlin/biokotlin/1.0.0 Latest JAR biokotlin-0.26-all.jar in org/biokotlin/biokotlin/0.26 JAR biokotlin-0.25-all.jar in org/biokotlin/biokotlin/0.25 JAR biokotlin-0.23-all.jar in org/biokotlin/biokotlin/0.23 JAR biokotlin-0.22-all.jar in org/biokotlin/biokotlin/0.22 JAR biokotlin-0.21-all.jar in org/biokotlin/biokotlin/0.21 JAR biokotlin-0.20-all.jar in org/biokotlin/biokotlin/0.20 JAR biokotlin-0.19-all.jar in org/biokotlin/biokotlin/0.19 JAR biokotlin-0.18-all.jar in org/biokotlin/biokotlin/0.18 JAR biokotlin-0.16-all.jar in org/biokotlin/biokotlin/0.16 JAR biokotlin-0.15-all.jar in org/biokotlin/biokotlin/0.15 JAR biokotlin-0.05.jar in org/biokotlin/biokotlin/0.05 JAR tassel-5.2.97.jar in org/btmonier/tassel/5.2.97 Latest JAR tassel-5.2.97-all.jar in org/btmonier/tassel/5.2.97 JAR dsh-bio-adam-2.2.jar in org/dishevelled/dsh-bio-adam/2.2 JAR dsh-bio-compress-hdfs-2.2.jar in org/dishevelled/dsh-bio-compress-hdfs/2.2 JAR annotations-0.6.1.144.jar in org/forome/annotations/0.6.1.144 JAR astorage-1.0.0p13.jar in org/forome/astorage/1.0.0p13 JAR astorage.core-1.0.0p13.jar in org/forome/astorage.core/1.0.0p13 JAR astorage-1.0.0p13.jar in org/forome/astorage/astorage/1.0.0p13 JAR genomicsdb-1.5.5-allinone.jar in org/genomicsdb/genomicsdb/1.5.5 JAR vitt-cli-0.1.0.jar in org/monarchinitiative/vitt/vitt-cli/0.1.0 JAR opencga-storage-hadoop-core-2.12.9-jar-with-dependencies.jar in org/opencb/opencga/opencga-storage-hadoop-core/2.12.9 JAR opencga-storage-hadoop-lib-hdp3.1-4.0.0-jar-with-dependencies.jar in org/opencb/opencga/opencga-storage-hadoop-lib-hdp3.1/4.0.0 JAR oskar-spark-0.2.1-jar-with-dependencies.jar in org/opencb/oskar/oskar-spark/0.2.1