BioJava - JAR Search - findJAR.com

JAR biojava-protein-comparison-tool-7.3.0.jar in org/biojava/biojava-protein-comparison-tool/7.3.0 Java 21 Latest

JAR biojava-genome-7.3.0.jar in org/biojava/biojava-genome/7.3.0 Java 11

JAR biojava-aa-prop-7.3.0.jar in org/biojava/biojava-aa-prop/7.3.0 Java 11 Latest

JAR biojava-alignment-7.3.0.jar in org/biojava/biojava-alignment/7.3.0 Java 11 Latest

JAR biojava-aa-prop-7.3.0-jar-with-dependencies.jar in org/biojava/biojava-aa-prop/7.3.0 Java 21

JAR biojava-integrationtest-7.2.6.jar in org/biojava/biojava-integrationtest/7.2.6

JAR biojava-alignment-7.2.6.jar in org/biojava/biojava-alignment/7.2.6 Java 11

JAR biojava-protein-comparison-tool-7.2.6.jar in org/biojava/biojava-protein-comparison-tool/7.2.6 Java 11

JAR biojava-ontology-7.2.6.jar in org/biojava/biojava-ontology/7.2.6 Java 11

JAR biojava-aa-prop-7.2.6.jar in org/biojava/biojava-aa-prop/7.2.6 Java 11

CLASS org.biojava.nbio.aaproperties.CommandPrompt

CLASS org.biojava.nbio.aaproperties.CommandPrompt$PropertyName

CLASS org.biojava.nbio.aaproperties.Constraints

CLASS org.biojava.nbio.aaproperties.IPeptideProperties

CLASS org.biojava.nbio.aaproperties.PeptideProperties

CLASS org.biojava.nbio.aaproperties.PeptideProperties$SingleLetterAACode

CLASS org.biojava.nbio.aaproperties.PeptidePropertiesImpl

CLASS org.biojava.nbio.aaproperties.Utils

CLASS org.biojava.nbio.aaproperties.profeat.IProfeatProperties

CLASS org.biojava.nbio.aaproperties.profeat.IProfeatProperties$ATTRIBUTE

CLASS org.biojava.nbio.aaproperties.profeat.IProfeatProperties$DISTRIBUTION

CLASS org.biojava.nbio.aaproperties.profeat.IProfeatProperties$GROUPING

CLASS org.biojava.nbio.aaproperties.profeat.IProfeatProperties$TRANSITION

CLASS org.biojava.nbio.aaproperties.profeat.ProfeatProperties

CLASS org.biojava.nbio.aaproperties.profeat.ProfeatPropertiesImpl

CLASS org.biojava.nbio.aaproperties.profeat.ProfeatPropertiesImpl$1

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2Charge

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2Hydrophobicity

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2NormalizedVanDerWaalsVolume

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2Polarity

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2Polarizability

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2SecondaryStructure

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convert2SolventAccessibility

CLASS org.biojava.nbio.aaproperties.profeat.convertor.Convertor

CLASS org.biojava.nbio.aaproperties.xml.AminoAcidComposition

CLASS org.biojava.nbio.aaproperties.xml.AminoAcidCompositionTable

CLASS org.biojava.nbio.aaproperties.xml.CaseFreeAminoAcidCompoundSet

CLASS org.biojava.nbio.aaproperties.xml.Element

CLASS org.biojava.nbio.aaproperties.xml.ElementTable

CLASS org.biojava.nbio.aaproperties.xml.Isotope

CLASS org.biojava.nbio.aaproperties.xml.ModifiedAminoAcidCompoundSet

CLASS org.biojava.nbio.aaproperties.xml.MyValidationEventHandler

CLASS org.biojava.nbio.aaproperties.xml.Name2Count

CLASS org.biojava.nbio.aaproperties.xml.SchemaGenerator

CLASS org.biojava.nbio.alignment.Alignments

CLASS org.biojava.nbio.alignment.Alignments$1

CLASS org.biojava.nbio.alignment.Alignments$PairInProfileScorerType

CLASS org.biojava.nbio.alignment.Alignments$PairwiseSequenceAlignerType

CLASS org.biojava.nbio.alignment.Alignments$PairwiseSequenceScorerType

CLASS org.biojava.nbio.alignment.Alignments$ProfileProfileAlignerType

CLASS org.biojava.nbio.alignment.Alignments$RefinerType

CLASS org.biojava.nbio.alignment.FractionalIdentityInProfileScorer

CLASS org.biojava.nbio.alignment.FractionalIdentityScorer

CLASS org.biojava.nbio.alignment.FractionalSimilarityInProfileScorer

CLASS org.biojava.nbio.alignment.FractionalSimilarityScorer

CLASS org.biojava.nbio.alignment.GuideTree

CLASS org.biojava.nbio.alignment.GuideTree$1

CLASS org.biojava.nbio.alignment.GuideTree$Node

CLASS org.biojava.nbio.alignment.GuideTree$PostOrderIterator

CLASS org.biojava.nbio.alignment.NeedlemanWunsch

CLASS org.biojava.nbio.alignment.SimpleGapPenalty

CLASS org.biojava.nbio.alignment.SimpleProfileProfileAligner

CLASS org.biojava.nbio.alignment.SmithWaterman

CLASS org.biojava.nbio.alignment.StandardRescoreRefiner

CLASS org.biojava.nbio.alignment.SubstitutionMatrixScorer

CLASS org.biojava.nbio.alignment.io.StockholmConsensusAnnotation

CLASS org.biojava.nbio.alignment.io.StockholmFileAnnotation

CLASS org.biojava.nbio.alignment.io.StockholmFileAnnotation$StockholmFileAnnotationReference

CLASS org.biojava.nbio.alignment.io.StockholmFileParser

CLASS org.biojava.nbio.alignment.io.StockholmResidueAnnotation

CLASS org.biojava.nbio.alignment.io.StockholmSequenceAnnotation

CLASS org.biojava.nbio.alignment.io.StockholmStructure

CLASS org.biojava.nbio.alignment.io.StockholmStructure$DatabaseReference

CLASS org.biojava.nbio.alignment.routines.AlignerHelper

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$1

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$Anchor

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$Anchor$QueryIndexComparator

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$Cut

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$Last

CLASS org.biojava.nbio.alignment.routines.AlignerHelper$Subproblem

CLASS org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner

CLASS org.biojava.nbio.alignment.routines.GuanUberbacher

CLASS org.biojava.nbio.alignment.template.AbstractMatrixAligner

CLASS org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner

CLASS org.biojava.nbio.alignment.template.AbstractProfileProfileAligner

CLASS org.biojava.nbio.alignment.template.AbstractScorer

CLASS org.biojava.nbio.alignment.template.Aligner

CLASS org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner

CLASS org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer

CLASS org.biojava.nbio.alignment.template.CallableProfileProfileAligner

CLASS org.biojava.nbio.alignment.template.GapPenalty

CLASS org.biojava.nbio.alignment.template.GapPenalty$Type

CLASS org.biojava.nbio.alignment.template.GuideTreeNode

CLASS org.biojava.nbio.alignment.template.HierarchicalClusterer

CLASS org.biojava.nbio.alignment.template.MatrixAligner

CLASS org.biojava.nbio.alignment.template.PairInProfileScorer

CLASS org.biojava.nbio.alignment.template.PairwiseSequenceAligner

CLASS org.biojava.nbio.alignment.template.PairwiseSequenceScorer

CLASS org.biojava.nbio.alignment.template.PartitionRefiner

CLASS org.biojava.nbio.alignment.template.ProfileProfileAligner

CLASS org.biojava.nbio.alignment.template.ProfileProfileScorer

CLASS org.biojava.nbio.alignment.template.RescoreRefiner

CLASS org.biojava.nbio.alignment.template.Scorer

CLASS org.biojava.nbio.core.alignment.SimpleAlignedSequence

CLASS org.biojava.nbio.core.alignment.SimpleProfile

CLASS org.biojava.nbio.core.alignment.SimpleProfile$1

CLASS org.biojava.nbio.core.alignment.SimpleProfilePair

CLASS org.biojava.nbio.core.alignment.SimpleSequencePair

CLASS org.biojava.nbio.core.alignment.matrices.AAIndexFileParser

CLASS org.biojava.nbio.core.alignment.matrices.AAIndexProvider

CLASS org.biojava.nbio.core.alignment.matrices.AAindexFactory

CLASS org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider

CLASS org.biojava.nbio.core.alignment.matrices.ScaledSubstitutionMatrix

CLASS org.biojava.nbio.core.alignment.matrices.SimpleSubstitutionMatrix

CLASS org.biojava.nbio.core.alignment.matrices.SubstitutionMatrixHelper

CLASS org.biojava.nbio.core.alignment.template.AlignedSequence

CLASS org.biojava.nbio.core.alignment.template.AlignedSequence$Step

CLASS org.biojava.nbio.core.alignment.template.MutableAlignedSequence

CLASS org.biojava.nbio.core.alignment.template.MutableProfile

CLASS org.biojava.nbio.core.alignment.template.MutableProfilePair

CLASS org.biojava.nbio.core.alignment.template.MutableSequencePair

CLASS org.biojava.nbio.core.alignment.template.Profile

CLASS org.biojava.nbio.core.alignment.template.Profile$StringFormat

CLASS org.biojava.nbio.core.alignment.template.ProfilePair

CLASS org.biojava.nbio.core.alignment.template.ProfileView

CLASS org.biojava.nbio.core.alignment.template.SequencePair

CLASS org.biojava.nbio.core.alignment.template.SubstitutionMatrix

CLASS org.biojava.nbio.core.exceptions.CompoundNotFoundException

CLASS org.biojava.nbio.core.exceptions.Messages

CLASS org.biojava.nbio.core.exceptions.ParserException

CLASS org.biojava.nbio.core.exceptions.TranslationException

CLASS org.biojava.nbio.core.search.io.Hit

CLASS org.biojava.nbio.core.search.io.Hit$1

CLASS org.biojava.nbio.core.search.io.Hsp

CLASS org.biojava.nbio.core.search.io.Result

CLASS org.biojava.nbio.core.search.io.Result$1

CLASS org.biojava.nbio.core.search.io.ResultFactory

CLASS org.biojava.nbio.core.search.io.SearchIO

CLASS org.biojava.nbio.core.search.io.SearchIO$1

CLASS org.biojava.nbio.core.search.io.blast.BlastHit

CLASS org.biojava.nbio.core.search.io.blast.BlastHitBuilder

CLASS org.biojava.nbio.core.search.io.blast.BlastHsp

CLASS org.biojava.nbio.core.search.io.blast.BlastHspBuilder

CLASS org.biojava.nbio.core.search.io.blast.BlastResult

CLASS org.biojava.nbio.core.search.io.blast.BlastResultBuilder

CLASS org.biojava.nbio.core.search.io.blast.BlastTabularParser

CLASS org.biojava.nbio.core.search.io.blast.BlastTabularParser$PARSING_CONSISTENCY

CLASS org.biojava.nbio.core.search.io.blast.BlastXMLParser

CLASS org.biojava.nbio.core.sequence.AccessionID

CLASS org.biojava.nbio.core.sequence.BasicSequence

CLASS org.biojava.nbio.core.sequence.CDSComparator

CLASS org.biojava.nbio.core.sequence.CDSSequence

CLASS org.biojava.nbio.core.sequence.ChromosomeSequence

CLASS org.biojava.nbio.core.sequence.DNASequence

CLASS org.biojava.nbio.core.sequence.DNASequence$DNAType

CLASS org.biojava.nbio.core.sequence.DataSource

CLASS org.biojava.nbio.core.sequence.ExonComparator

CLASS org.biojava.nbio.core.sequence.ExonSequence

CLASS org.biojava.nbio.core.sequence.GeneSequence

CLASS org.biojava.nbio.core.sequence.IntronSequence

CLASS org.biojava.nbio.core.sequence.MultipleSequenceAlignment

CLASS org.biojava.nbio.core.sequence.MultipleSequenceAlignment$1

CLASS org.biojava.nbio.core.sequence.ProteinSequence

CLASS org.biojava.nbio.core.sequence.RNASequence

CLASS org.biojava.nbio.core.sequence.SequenceComparator

CLASS org.biojava.nbio.core.sequence.SequenceOptimizationHints

CLASS org.biojava.nbio.core.sequence.SequenceOptimizationHints$SequenceCollection

CLASS org.biojava.nbio.core.sequence.SequenceOptimizationHints$SequenceUsage

CLASS org.biojava.nbio.core.sequence.StartCodonSequence

CLASS org.biojava.nbio.core.sequence.StopCodonSequence

CLASS org.biojava.nbio.core.sequence.Strand

CLASS org.biojava.nbio.core.sequence.Strand$1

CLASS org.biojava.nbio.core.sequence.TaxonomyID

CLASS org.biojava.nbio.core.sequence.TranscriptSequence

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet$InitaliseOnDemand

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet$InitaliseOnDemand

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityRNACompoundSet

CLASS org.biojava.nbio.core.sequence.compound.AmbiguityRNACompoundSet$InitaliseOnDemand

CLASS org.biojava.nbio.core.sequence.compound.AminoAcidCompound

CLASS org.biojava.nbio.core.sequence.compound.AminoAcidCompoundSet

CLASS org.biojava.nbio.core.sequence.compound.CodonCompound

CLASS org.biojava.nbio.core.sequence.compound.DNACompoundSet

CLASS org.biojava.nbio.core.sequence.compound.DNACompoundSet$InitaliseOnDemand

CLASS org.biojava.nbio.core.sequence.compound.NucleotideCompound

CLASS org.biojava.nbio.core.sequence.compound.RNACompoundSet

CLASS org.biojava.nbio.core.sequence.compound.RNACompoundSet$InitaliseOnDemand

CLASS org.biojava.nbio.core.sequence.edits.Edit

CLASS org.biojava.nbio.core.sequence.edits.Edit$AbstractEdit

CLASS org.biojava.nbio.core.sequence.edits.Edit$Delete

CLASS org.biojava.nbio.core.sequence.edits.Edit$Insert

CLASS org.biojava.nbio.core.sequence.edits.Edit$Substitute

CLASS org.biojava.nbio.core.sequence.features.AbstractFeature

CLASS org.biojava.nbio.core.sequence.features.AbstractFeature$1

CLASS org.biojava.nbio.core.sequence.features.AbstractFeature$2

CLASS org.biojava.nbio.core.sequence.features.AbstractFeature$3

CLASS org.biojava.nbio.core.sequence.features.DBReferenceInfo

CLASS org.biojava.nbio.core.sequence.features.DatabaseReferenceInterface

CLASS org.biojava.nbio.core.sequence.features.FeatureDbReferenceInfo

CLASS org.biojava.nbio.core.sequence.features.FeatureInterface

CLASS org.biojava.nbio.core.sequence.features.FeatureRetriever

CLASS org.biojava.nbio.core.sequence.features.FeaturesKeyWordInterface

CLASS org.biojava.nbio.core.sequence.features.Qualifier

CLASS org.biojava.nbio.core.sequence.features.QualityFeature

CLASS org.biojava.nbio.core.sequence.features.QuantityFeature

CLASS org.biojava.nbio.core.sequence.features.TextFeature

CLASS org.biojava.nbio.core.sequence.io.BufferedReaderBytesRead

CLASS org.biojava.nbio.core.sequence.io.CasePreservingProteinSequenceCreator

CLASS org.biojava.nbio.core.sequence.io.DNASequenceCreator

CLASS org.biojava.nbio.core.sequence.io.FastaGeneWriter

CLASS org.biojava.nbio.core.sequence.io.FastaReader

CLASS org.biojava.nbio.core.sequence.io.FastaReaderHelper

CLASS org.biojava.nbio.core.sequence.io.FastaSequenceParser

CLASS org.biojava.nbio.core.sequence.io.FastaWriter

CLASS org.biojava.nbio.core.sequence.io.FastaWriterHelper

CLASS org.biojava.nbio.core.sequence.io.FastaWriterHelper$1

CLASS org.biojava.nbio.core.sequence.io.FileProxyDNASequenceCreator

CLASS org.biojava.nbio.core.sequence.io.FileProxyProteinSequenceCreator

CLASS org.biojava.nbio.core.sequence.io.GenbankReader

CLASS org.biojava.nbio.core.sequence.io.GenbankReaderHelper

CLASS org.biojava.nbio.core.sequence.io.GenbankSequenceParser

CLASS org.biojava.nbio.core.sequence.io.GenbankWriter

CLASS org.biojava.nbio.core.sequence.io.GenbankWriterHelper

CLASS org.biojava.nbio.core.sequence.io.GenbankWriterHelper$1

CLASS org.biojava.nbio.core.sequence.io.GenericFastaHeaderFormat

CLASS org.biojava.nbio.core.sequence.io.GenericFastaHeaderParser

CLASS org.biojava.nbio.core.sequence.io.GenericGenbankHeaderFormat

CLASS org.biojava.nbio.core.sequence.io.GenericGenbankHeaderParser

CLASS org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat

CLASS org.biojava.nbio.core.sequence.io.IUPACParser

CLASS org.biojava.nbio.core.sequence.io.IUPACParser$IOD

CLASS org.biojava.nbio.core.sequence.io.IUPACParser$IUPACTable

CLASS org.biojava.nbio.core.sequence.io.IUPACParser$IUPACTable$1

CLASS org.biojava.nbio.core.sequence.io.PlainFastaHeaderParser

CLASS org.biojava.nbio.core.sequence.io.ProteinSequenceCreator

CLASS org.biojava.nbio.core.sequence.io.RNASequenceCreator

CLASS org.biojava.nbio.core.sequence.io.template.FastaHeaderFormatInterface

CLASS org.biojava.nbio.core.sequence.io.template.GenbankHeaderFormatInterface

CLASS org.biojava.nbio.core.sequence.io.template.SequenceCreatorInterface

CLASS org.biojava.nbio.core.sequence.io.template.SequenceHeaderParserInterface

CLASS org.biojava.nbio.core.sequence.io.template.SequenceParserInterface

CLASS org.biojava.nbio.core.sequence.io.util.ClasspathResource

CLASS org.biojava.nbio.core.sequence.io.util.IOUtils

CLASS org.biojava.nbio.core.sequence.io.util.IOUtils$1

CLASS org.biojava.nbio.core.sequence.io.util.IOUtils$ReaderProcessor

CLASS org.biojava.nbio.core.sequence.loader.ArrayListProxySequenceReader

CLASS org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader

CLASS org.biojava.nbio.core.sequence.loader.SequenceFileProxyLoader

CLASS org.biojava.nbio.core.sequence.loader.StringProxySequenceReader

CLASS org.biojava.nbio.core.sequence.loader.UniprotProxySequenceReader

CLASS org.biojava.nbio.core.sequence.location.FuzzyPoint

CLASS org.biojava.nbio.core.sequence.location.FuzzyPoint$1

CLASS org.biojava.nbio.core.sequence.location.FuzzyPoint$2

CLASS org.biojava.nbio.core.sequence.location.FuzzyPoint$3

CLASS org.biojava.nbio.core.sequence.location.InsdcLocations

CLASS org.biojava.nbio.core.sequence.location.InsdcLocations$BondLocation

CLASS org.biojava.nbio.core.sequence.location.InsdcLocations$GroupLocation

CLASS org.biojava.nbio.core.sequence.location.InsdcLocations$OneOfLocation

CLASS org.biojava.nbio.core.sequence.location.InsdcLocations$OrderLocation

CLASS org.biojava.nbio.core.sequence.location.InsdcParser

CLASS org.biojava.nbio.core.sequence.location.InsdcParser$1

CLASS org.biojava.nbio.core.sequence.location.InsdcParser$complexFeaturesAppendEnum

CLASS org.biojava.nbio.core.sequence.location.LocationHelper

CLASS org.biojava.nbio.core.sequence.location.LocationHelper$1

CLASS org.biojava.nbio.core.sequence.location.LocationHelper$2

CLASS org.biojava.nbio.core.sequence.location.LocationHelper$LocationPredicate

CLASS org.biojava.nbio.core.sequence.location.SequenceLocation

CLASS org.biojava.nbio.core.sequence.location.SimpleLocation

CLASS org.biojava.nbio.core.sequence.location.SimplePoint

CLASS org.biojava.nbio.core.sequence.location.template.AbstractLocation

CLASS org.biojava.nbio.core.sequence.location.template.AccesionedLocation

CLASS org.biojava.nbio.core.sequence.location.template.Location

CLASS org.biojava.nbio.core.sequence.location.template.Location$Tools

CLASS org.biojava.nbio.core.sequence.location.template.Location$Tools$1

CLASS org.biojava.nbio.core.sequence.location.template.Location$Tools$2

CLASS org.biojava.nbio.core.sequence.location.template.Location$Tools$LocationPredicate

CLASS org.biojava.nbio.core.sequence.location.template.Point

CLASS org.biojava.nbio.core.sequence.location.template.Point$Resolver

CLASS org.biojava.nbio.core.sequence.storage.ArrayListSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.BitSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.BitSequenceReader$BitArrayWorker

CLASS org.biojava.nbio.core.sequence.storage.FourBitSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.FourBitSequenceReader$FourBitArrayWorker

CLASS org.biojava.nbio.core.sequence.storage.FourBitSequenceReader$FourBitArrayWorker$1

CLASS org.biojava.nbio.core.sequence.storage.JoiningSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.JoiningSequenceReader$1

CLASS org.biojava.nbio.core.sequence.storage.SequenceAsStringHelper

CLASS org.biojava.nbio.core.sequence.storage.SingleCompoundSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.TwoBitSequenceReader

CLASS org.biojava.nbio.core.sequence.storage.TwoBitSequenceReader$TwoBitArrayWorker

CLASS org.biojava.nbio.core.sequence.storage.TwoBitSequenceReader$TwoBitArrayWorker$1

CLASS org.biojava.nbio.core.sequence.template.AbstractCompound

CLASS org.biojava.nbio.core.sequence.template.AbstractCompoundSet

CLASS org.biojava.nbio.core.sequence.template.AbstractCompoundTranslator

CLASS org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

CLASS org.biojava.nbio.core.sequence.template.AbstractSequence

CLASS org.biojava.nbio.core.sequence.template.AbstractSequence$AnnotationType

CLASS org.biojava.nbio.core.sequence.template.Accessioned

CLASS org.biojava.nbio.core.sequence.template.ComplementCompound

CLASS org.biojava.nbio.core.sequence.template.Compound

CLASS org.biojava.nbio.core.sequence.template.CompoundSet

CLASS org.biojava.nbio.core.sequence.template.CompoundTranslator

CLASS org.biojava.nbio.core.sequence.template.LightweightProfile

CLASS org.biojava.nbio.core.sequence.template.LightweightProfile$StringFormat

CLASS org.biojava.nbio.core.sequence.template.ProxySequenceReader

CLASS org.biojava.nbio.core.sequence.template.Sequence

CLASS org.biojava.nbio.core.sequence.template.SequenceMixin

CLASS org.biojava.nbio.core.sequence.template.SequenceMixin$SequenceIterator

CLASS org.biojava.nbio.core.sequence.template.SequenceProxyView

CLASS org.biojava.nbio.core.sequence.template.SequenceReader

CLASS org.biojava.nbio.core.sequence.template.SequenceView

CLASS org.biojava.nbio.core.sequence.transcription.CaseInsensitiveCompound

CLASS org.biojava.nbio.core.sequence.transcription.DNAToRNATranslator

CLASS org.biojava.nbio.core.sequence.transcription.Frame

CLASS org.biojava.nbio.core.sequence.transcription.RNAToAminoAcidTranslator

CLASS org.biojava.nbio.core.sequence.transcription.Table

CLASS org.biojava.nbio.core.sequence.transcription.Table$CaseInsensitiveTriplet

CLASS org.biojava.nbio.core.sequence.transcription.Table$Codon

CLASS org.biojava.nbio.core.sequence.transcription.TranscriptionEngine

CLASS org.biojava.nbio.core.sequence.transcription.TranscriptionEngine$1

CLASS org.biojava.nbio.core.sequence.transcription.TranscriptionEngine$Builder

CLASS org.biojava.nbio.core.sequence.transcription.TranscriptionEngine$IOD

CLASS org.biojava.nbio.core.sequence.views.ComplementSequenceView

CLASS org.biojava.nbio.core.sequence.views.ReversedSequenceView

CLASS org.biojava.nbio.core.sequence.views.RnaSequenceView

CLASS org.biojava.nbio.core.sequence.views.WindowedSequence

CLASS org.biojava.nbio.core.sequence.views.WindowedSequence$WindowedSequenceIterator

CLASS org.biojava.nbio.core.util.CRC64Checksum

CLASS org.biojava.nbio.core.util.ConcurrencyTools

CLASS org.biojava.nbio.core.util.Equals

CLASS org.biojava.nbio.core.util.FlatFileCache

CLASS org.biojava.nbio.core.util.Hashcoder

CLASS org.biojava.nbio.core.util.InputStreamProvider

CLASS org.biojava.nbio.core.util.PrettyXMLWriter

CLASS org.biojava.nbio.core.util.SequenceTools

CLASS org.biojava.nbio.core.util.SingleLinkageClusterer

CLASS org.biojava.nbio.core.util.SingleLinkageClusterer$LinkedPair

CLASS org.biojava.nbio.core.util.SoftHashMap

CLASS org.biojava.nbio.core.util.SoftHashMap$1

CLASS org.biojava.nbio.core.util.SoftHashMap$SoftValue

CLASS org.biojava.nbio.core.util.StringManipulationHelper

CLASS org.biojava.nbio.core.util.UncompressInputStream

CLASS org.biojava.nbio.core.util.XMLHelper

CLASS org.biojava.nbio.core.util.XMLWriter

CLASS org.biojava.nbio.data.sequence.FastaSequence

CLASS org.biojava.nbio.data.sequence.SequenceUtil

CLASS org.biojava.nbio.genome.App

CLASS org.biojava.nbio.genome.GeneFeatureHelper

CLASS org.biojava.nbio.genome.homology.BlastHomologyHits

CLASS org.biojava.nbio.genome.homology.GFF3FromUniprotBlastHits

CLASS org.biojava.nbio.genome.parsers.cytoband.Cytoband

CLASS org.biojava.nbio.genome.parsers.cytoband.CytobandParser

CLASS org.biojava.nbio.genome.parsers.cytoband.StainType

CLASS org.biojava.nbio.genome.parsers.geneid.GeneIDXMLReader

CLASS org.biojava.nbio.genome.parsers.genename.ChromPos

CLASS org.biojava.nbio.genome.parsers.genename.GeneChromosomePosition

CLASS org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser

CLASS org.biojava.nbio.genome.parsers.genename.GeneName

CLASS org.biojava.nbio.genome.parsers.genename.GeneNamesParser

CLASS org.biojava.nbio.genome.parsers.gff.Feature

CLASS org.biojava.nbio.genome.parsers.gff.FeatureHelper

CLASS org.biojava.nbio.genome.parsers.gff.FeatureI

CLASS org.biojava.nbio.genome.parsers.gff.FeatureList

CLASS org.biojava.nbio.genome.parsers.gff.FeatureList$1

CLASS org.biojava.nbio.genome.parsers.gff.FeatureList$FeatureComparator

CLASS org.biojava.nbio.genome.parsers.gff.GCStats

CLASS org.biojava.nbio.genome.parsers.gff.GFF3Reader

CLASS org.biojava.nbio.genome.parsers.gff.GFF3Writer

CLASS org.biojava.nbio.genome.parsers.gff.GeneIDGFF2Reader

CLASS org.biojava.nbio.genome.parsers.gff.GeneMarkGTFReader

CLASS org.biojava.nbio.genome.parsers.gff.LocIterator

CLASS org.biojava.nbio.genome.parsers.gff.Location

CLASS org.biojava.nbio.genome.parsers.gff.Location$1

CLASS org.biojava.nbio.genome.parsers.twobit.TwoBitParser

CLASS org.biojava.nbio.genome.query.BlastXMLQuery

CLASS org.biojava.nbio.genome.query.OutputHitsGFF

CLASS org.biojava.nbio.genome.uniprot.UniprotToFasta

CLASS org.biojava.nbio.genome.util.ChromosomeMappingTools

CLASS org.biojava.nbio.genome.util.SplitFasta

CLASS org.biojava.nbio.ontology.AbstractTerm

CLASS org.biojava.nbio.ontology.AlreadyExistsException

CLASS org.biojava.nbio.ontology.App

CLASS org.biojava.nbio.ontology.DefaultOps

CLASS org.biojava.nbio.ontology.IntegerOntology

CLASS org.biojava.nbio.ontology.IntegerOntology$1

CLASS org.biojava.nbio.ontology.IntegerOntology$1$1

CLASS org.biojava.nbio.ontology.IntegerOntology$2

CLASS org.biojava.nbio.ontology.IntegerOntology$IntTerm

CLASS org.biojava.nbio.ontology.InvalidTermException

CLASS org.biojava.nbio.ontology.OntoTools

CLASS org.biojava.nbio.ontology.OntoTools$1

CLASS org.biojava.nbio.ontology.Ontology

CLASS org.biojava.nbio.ontology.Ontology$Impl

CLASS org.biojava.nbio.ontology.Ontology$Impl$1

CLASS org.biojava.nbio.ontology.OntologyException

CLASS org.biojava.nbio.ontology.OntologyFactory

CLASS org.biojava.nbio.ontology.OntologyOps

CLASS org.biojava.nbio.ontology.OntologyTerm

CLASS org.biojava.nbio.ontology.OntologyTerm$Impl

CLASS org.biojava.nbio.ontology.RemoteTerm

CLASS org.biojava.nbio.ontology.RemoteTerm$Impl

CLASS org.biojava.nbio.ontology.Synonym

CLASS org.biojava.nbio.ontology.Synonym$1

CLASS org.biojava.nbio.ontology.Term

CLASS org.biojava.nbio.ontology.Term$Impl

CLASS org.biojava.nbio.ontology.Triple

CLASS org.biojava.nbio.ontology.Triple$Impl

CLASS org.biojava.nbio.ontology.Variable

CLASS org.biojava.nbio.ontology.Variable$Impl

CLASS org.biojava.nbio.ontology.io.GOParser

CLASS org.biojava.nbio.ontology.io.OboParser

CLASS org.biojava.nbio.ontology.io.TabDelimParser

CLASS org.biojava.nbio.ontology.obo.NestedValue

CLASS org.biojava.nbio.ontology.obo.OboFileEventListener

CLASS org.biojava.nbio.ontology.obo.OboFileHandler

CLASS org.biojava.nbio.ontology.obo.OboFileParser

CLASS org.biojava.nbio.ontology.obo.OboFileParser$SOPair

CLASS org.biojava.nbio.ontology.utils.AbstractAnnotation

CLASS org.biojava.nbio.ontology.utils.Annotatable

CLASS org.biojava.nbio.ontology.utils.Annotation

CLASS org.biojava.nbio.ontology.utils.AssertionFailure

CLASS org.biojava.nbio.ontology.utils.EmptyAnnotation

CLASS org.biojava.nbio.ontology.utils.KeyedWeakReference

CLASS org.biojava.nbio.ontology.utils.SmallAnnotation

CLASS org.biojava.nbio.ontology.utils.SmallMap

CLASS org.biojava.nbio.ontology.utils.SmallMap$1

CLASS org.biojava.nbio.ontology.utils.SmallMap$EntryIterator

CLASS org.biojava.nbio.ontology.utils.SmallMap$EntrySet

CLASS org.biojava.nbio.ontology.utils.SmallMap$KeyIterator

CLASS org.biojava.nbio.ontology.utils.SmallMap$KeySet

CLASS org.biojava.nbio.ontology.utils.SmallMap$MapEntry

CLASS org.biojava.nbio.ontology.utils.StaticMemberPlaceHolder

CLASS org.biojava.nbio.ontology.utils.WeakValueHashMap

CLASS org.biojava.nbio.ontology.utils.WeakValueHashMap$1

CLASS org.biojava.nbio.ontology.utils.WeakValueHashMap$WVEntryIterator

CLASS org.biojava.nbio.ontology.utils.WeakValueHashMap$WVEntrySet

CLASS org.biojava.nbio.ontology.utils.WeakValueHashMap$WVMapEntry

CLASS org.biojava.nbio.phosphosite.Dataset

CLASS org.biojava.nbio.phosphosite.Site

CLASS org.biojava.nbio.phylo.Comparison

CLASS org.biojava.nbio.phylo.DistanceMatrixCalculator

CLASS org.biojava.nbio.phylo.DistanceTreeEvaluator

CLASS org.biojava.nbio.phylo.ForesterWrapper

CLASS org.biojava.nbio.phylo.ForesterWrapper$1

CLASS org.biojava.nbio.phylo.TreeConstructor

CLASS org.biojava.nbio.phylo.TreeConstructor$1

CLASS org.biojava.nbio.phylo.TreeConstructorType

CLASS org.biojava.nbio.phylo.TreeType

CLASS org.biojava.nbio.protmod.Component

CLASS org.biojava.nbio.protmod.ModificationCategory

CLASS org.biojava.nbio.protmod.ModificationCondition

CLASS org.biojava.nbio.protmod.ModificationConditionImpl

CLASS org.biojava.nbio.protmod.ModificationLinkage

CLASS org.biojava.nbio.protmod.ModificationOccurrenceType

CLASS org.biojava.nbio.protmod.ProteinModification

CLASS org.biojava.nbio.protmod.ProteinModificationImpl

CLASS org.biojava.nbio.protmod.ProteinModificationImpl$1

CLASS org.biojava.nbio.protmod.ProteinModificationImpl$Builder

CLASS org.biojava.nbio.protmod.ProteinModificationRegistry

CLASS org.biojava.nbio.protmod.io.ComponentXMLConverter

CLASS org.biojava.nbio.protmod.io.ModifiedCompoundXMLConverter

CLASS org.biojava.nbio.protmod.io.ProteinModificationXmlReader

CLASS org.biojava.nbio.protmod.io.StructureAtomXMLConverter

CLASS org.biojava.nbio.protmod.io.StructureGroupXMLConverter

CLASS org.biojava.nbio.protmod.structure.ModifiedCompound

CLASS org.biojava.nbio.protmod.structure.ModifiedCompoundImpl

CLASS org.biojava.nbio.protmod.structure.ProteinModificationIdentifier

CLASS org.biojava.nbio.protmod.structure.StructureAtom

CLASS org.biojava.nbio.protmod.structure.StructureAtomLinkage

CLASS org.biojava.nbio.protmod.structure.StructureGroup

CLASS org.biojava.nbio.protmod.structure.StructureUtil

CLASS org.biojava.nbio.ronn.InputParameters

CLASS org.biojava.nbio.ronn.Jronn

CLASS org.biojava.nbio.ronn.Jronn$Range

CLASS org.biojava.nbio.ronn.ModelLoader

CLASS org.biojava.nbio.ronn.ModelLoader$Model

CLASS org.biojava.nbio.ronn.ModelLoader$Threshold

CLASS org.biojava.nbio.ronn.NullOutputStream

CLASS org.biojava.nbio.ronn.ORonn

CLASS org.biojava.nbio.ronn.ORonn$ResultLayout

CLASS org.biojava.nbio.ronn.ORonnModel

CLASS org.biojava.nbio.ronn.RonnConstraint

CLASS org.biojava.nbio.ronn.RonnConstraint$Threshold

CLASS org.biojava.nbio.ronn.Timer

CLASS org.biojava.nbio.sequencing.io.fastq.AbstractFastqReader

CLASS org.biojava.nbio.sequencing.io.fastq.AbstractFastqReader$1

CLASS org.biojava.nbio.sequencing.io.fastq.AbstractFastqReader$Collect

CLASS org.biojava.nbio.sequencing.io.fastq.AbstractFastqWriter

CLASS org.biojava.nbio.sequencing.io.fastq.Fastq

CLASS org.biojava.nbio.sequencing.io.fastq.FastqBuilder

CLASS org.biojava.nbio.sequencing.io.fastq.FastqParser

CLASS org.biojava.nbio.sequencing.io.fastq.FastqParser$1

CLASS org.biojava.nbio.sequencing.io.fastq.FastqParser$FastqParserLineProcessor

CLASS org.biojava.nbio.sequencing.io.fastq.FastqParser$State

CLASS org.biojava.nbio.sequencing.io.fastq.FastqReader

CLASS org.biojava.nbio.sequencing.io.fastq.FastqTools

CLASS org.biojava.nbio.sequencing.io.fastq.FastqVariant

CLASS org.biojava.nbio.sequencing.io.fastq.FastqVariant$1

CLASS org.biojava.nbio.sequencing.io.fastq.FastqVariant$2

CLASS org.biojava.nbio.sequencing.io.fastq.FastqVariant$3

CLASS org.biojava.nbio.sequencing.io.fastq.FastqWriter

CLASS org.biojava.nbio.sequencing.io.fastq.IlluminaFastqReader

CLASS org.biojava.nbio.sequencing.io.fastq.IlluminaFastqWriter

CLASS org.biojava.nbio.sequencing.io.fastq.ParseListener

CLASS org.biojava.nbio.sequencing.io.fastq.SangerFastqReader

CLASS org.biojava.nbio.sequencing.io.fastq.SangerFastqWriter

CLASS org.biojava.nbio.sequencing.io.fastq.SolexaFastqReader

CLASS org.biojava.nbio.sequencing.io.fastq.SolexaFastqWriter

CLASS org.biojava.nbio.sequencing.io.fastq.StreamListener

CLASS org.biojava.nbio.sequencing.io.fastq.StreamingFastqParser

CLASS org.biojava.nbio.sequencing.io.fastq.StreamingFastqParser$1

CLASS org.biojava.nbio.structure.AminoAcid

CLASS org.biojava.nbio.structure.AminoAcidImpl

CLASS org.biojava.nbio.structure.Atom

CLASS org.biojava.nbio.structure.AtomImpl

CLASS org.biojava.nbio.structure.AtomIterator

CLASS org.biojava.nbio.structure.AtomPositionMap

CLASS org.biojava.nbio.structure.AtomPositionMap$1

CLASS org.biojava.nbio.structure.AtomPositionMap$2

CLASS org.biojava.nbio.structure.AtomPositionMap$GroupMatcher

CLASS org.biojava.nbio.structure.AtomPositionMap$ValueComparator

CLASS org.biojava.nbio.structure.AugmentedResidueRange

CLASS org.biojava.nbio.structure.Author

CLASS org.biojava.nbio.structure.BioAssemblyIdentifier

CLASS org.biojava.nbio.structure.Bond

CLASS org.biojava.nbio.structure.BondImpl

CLASS org.biojava.nbio.structure.BondType

CLASS org.biojava.nbio.structure.Calc

CLASS org.biojava.nbio.structure.Chain

CLASS org.biojava.nbio.structure.ChainImpl

CLASS org.biojava.nbio.structure.DBRef

CLASS org.biojava.nbio.structure.Element

CLASS org.biojava.nbio.structure.ElementType

CLASS org.biojava.nbio.structure.EntityInfo

CLASS org.biojava.nbio.structure.EntityType

CLASS org.biojava.nbio.structure.ExperimentalTechnique

CLASS org.biojava.nbio.structure.Group

CLASS org.biojava.nbio.structure.GroupIterator

CLASS org.biojava.nbio.structure.GroupType

CLASS org.biojava.nbio.structure.HetatomImpl

CLASS org.biojava.nbio.structure.HetatomImpl$PerformanceBehavior

CLASS org.biojava.nbio.structure.Identifier

CLASS org.biojava.nbio.structure.JournalArticle

CLASS org.biojava.nbio.structure.Model

CLASS org.biojava.nbio.structure.Mutator

CLASS org.biojava.nbio.structure.NucleotideImpl

CLASS org.biojava.nbio.structure.PDBCrystallographicInfo

CLASS org.biojava.nbio.structure.PDBHeader

CLASS org.biojava.nbio.structure.PDBRecord

CLASS org.biojava.nbio.structure.PDBStatus

CLASS org.biojava.nbio.structure.PDBStatus$1

CLASS org.biojava.nbio.structure.PDBStatus$2

CLASS org.biojava.nbio.structure.PDBStatus$3

CLASS org.biojava.nbio.structure.PDBStatus$PDBStatusXMLHandler

CLASS org.biojava.nbio.structure.PDBStatus$Status

CLASS org.biojava.nbio.structure.PassthroughIdentifier

CLASS org.biojava.nbio.structure.ResidueNumber

CLASS org.biojava.nbio.structure.ResidueRange

CLASS org.biojava.nbio.structure.ResidueRange$1

CLASS org.biojava.nbio.structure.ResidueRange$2

CLASS org.biojava.nbio.structure.ResidueRangeAndLength

CLASS org.biojava.nbio.structure.SVDSuperimposer

CLASS org.biojava.nbio.structure.SeqMisMatch

CLASS org.biojava.nbio.structure.SeqMisMatchImpl

CLASS org.biojava.nbio.structure.Site

CLASS org.biojava.nbio.structure.StandardAminoAcid

CLASS org.biojava.nbio.structure.Structure

CLASS org.biojava.nbio.structure.StructureException

CLASS org.biojava.nbio.structure.StructureIO

CLASS org.biojava.nbio.structure.StructureIO$StructureFiletype

CLASS org.biojava.nbio.structure.StructureIdentifier

CLASS org.biojava.nbio.structure.StructureImpl

CLASS org.biojava.nbio.structure.StructureTools

CLASS org.biojava.nbio.structure.StructureTools$1

CLASS org.biojava.nbio.structure.SubstructureIdentifier

CLASS org.biojava.nbio.structure.URLIdentifier

CLASS org.biojava.nbio.structure.URLIdentifier$1

CLASS org.biojava.nbio.structure.align.AFPTwister

CLASS org.biojava.nbio.structure.align.AbstractStructureAlignment

CLASS org.biojava.nbio.structure.align.BioJavaStructureAlignment

CLASS org.biojava.nbio.structure.align.CallableStructureAlignment

CLASS org.biojava.nbio.structure.align.ClusterAltAligs

CLASS org.biojava.nbio.structure.align.FarmJob

CLASS org.biojava.nbio.structure.align.MultiThreadedDBSearch

CLASS org.biojava.nbio.structure.align.MultipleStructureAligner

CLASS org.biojava.nbio.structure.align.StrucAligParameters

CLASS org.biojava.nbio.structure.align.StructureAlignment

CLASS org.biojava.nbio.structure.align.StructureAlignmentFactory

CLASS org.biojava.nbio.structure.align.StructurePairAligner

CLASS org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.ce.CECPParameters

CLASS org.biojava.nbio.structure.align.ce.CECPParameters$DuplicationHint

CLASS org.biojava.nbio.structure.align.ce.CECalculator

CLASS org.biojava.nbio.structure.align.ce.CeCPMain

CLASS org.biojava.nbio.structure.align.ce.CeCPMain$1

CLASS org.biojava.nbio.structure.align.ce.CeCPMain$CPRange

CLASS org.biojava.nbio.structure.align.ce.CeCPMain$CutPoint

CLASS org.biojava.nbio.structure.align.ce.CeCPMain$ResiduePair

CLASS org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor$CeCPStartupParams

CLASS org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced

CLASS org.biojava.nbio.structure.align.ce.CeMain

CLASS org.biojava.nbio.structure.align.ce.CeParameters

CLASS org.biojava.nbio.structure.align.ce.CeParameters$ScoringStrategy

CLASS org.biojava.nbio.structure.align.ce.CeSideChainMain

CLASS org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor$CeStartupParams

CLASS org.biojava.nbio.structure.align.ce.ConfigStrucAligParams

CLASS org.biojava.nbio.structure.align.ce.GuiWrapper

CLASS org.biojava.nbio.structure.align.ce.MatrixListener

CLASS org.biojava.nbio.structure.align.ce.OptimalCECPMain

CLASS org.biojava.nbio.structure.align.ce.OptimalCECPParameters

CLASS org.biojava.nbio.structure.align.ce.StartupParameters

CLASS org.biojava.nbio.structure.align.ce.UserArgumentProcessor

CLASS org.biojava.nbio.structure.align.client.CountProgressListener

CLASS org.biojava.nbio.structure.align.client.FarmJobParameters

CLASS org.biojava.nbio.structure.align.client.FarmJobRunnable

CLASS org.biojava.nbio.structure.align.client.JFatCatClient

CLASS org.biojava.nbio.structure.align.client.JobKillException

CLASS org.biojava.nbio.structure.align.client.PdbPair

CLASS org.biojava.nbio.structure.align.client.StructureName

CLASS org.biojava.nbio.structure.align.client.StructureName$1

CLASS org.biojava.nbio.structure.align.client.StructureName$Source

CLASS org.biojava.nbio.structure.align.events.AlignmentProgressListener

CLASS org.biojava.nbio.structure.align.fatcat.FatCat

CLASS org.biojava.nbio.structure.align.fatcat.FatCatFlexible

CLASS org.biojava.nbio.structure.align.fatcat.FatCatRigid

CLASS org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor$FatCatStartupParams

CLASS org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator

CLASS org.biojava.nbio.structure.align.fatcat.calc.AFPChainer

CLASS org.biojava.nbio.structure.align.fatcat.calc.AFPOptimizer

CLASS org.biojava.nbio.structure.align.fatcat.calc.AFPPostProcessor

CLASS org.biojava.nbio.structure.align.fatcat.calc.FCAlignHelper

CLASS org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner

CLASS org.biojava.nbio.structure.align.fatcat.calc.FatCatParameters

CLASS org.biojava.nbio.structure.align.fatcat.calc.SigEva

CLASS org.biojava.nbio.structure.align.fatcat.calc.StructureAlignmentOptimizer

CLASS org.biojava.nbio.structure.align.gui.AboutDialog

CLASS org.biojava.nbio.structure.align.gui.AboutDialog$1

CLASS org.biojava.nbio.structure.align.gui.AboutDialog$2

CLASS org.biojava.nbio.structure.align.gui.AlignmentCalc

CLASS org.biojava.nbio.structure.align.gui.AlignmentCalcDB

CLASS org.biojava.nbio.structure.align.gui.AlignmentCalculationRunnable

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui$1

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui$2

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui$3

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui$4

CLASS org.biojava.nbio.structure.align.gui.AlignmentGui$5

CLASS org.biojava.nbio.structure.align.gui.AlignmentTextPanel

CLASS org.biojava.nbio.structure.align.gui.ChooseDirAction

CLASS org.biojava.nbio.structure.align.gui.ConfigPDBInstallPanel

CLASS org.biojava.nbio.structure.align.gui.ConfigPDBInstallPanel$1

CLASS org.biojava.nbio.structure.align.gui.ConfigPDBInstallPanel$2

CLASS org.biojava.nbio.structure.align.gui.DBResultTable

CLASS org.biojava.nbio.structure.align.gui.DBResultTable$1

CLASS org.biojava.nbio.structure.align.gui.DBResultTable$RowListener

CLASS org.biojava.nbio.structure.align.gui.DBSearchGUI

CLASS org.biojava.nbio.structure.align.gui.DBSearchGUI$1

CLASS org.biojava.nbio.structure.align.gui.DBSearchGUI$2

CLASS org.biojava.nbio.structure.align.gui.DisplayAFP

CLASS org.biojava.nbio.structure.align.gui.DotPlotPanel

CLASS org.biojava.nbio.structure.align.gui.DotPlotPanel$1

CLASS org.biojava.nbio.structure.align.gui.GUIAlignmentProgressListener

CLASS org.biojava.nbio.structure.align.gui.GUIFarmJobRunnable

CLASS org.biojava.nbio.structure.align.gui.GUIFarmJobRunnable$1

CLASS org.biojava.nbio.structure.align.gui.HelpDialog

CLASS org.biojava.nbio.structure.align.gui.HelpDialog$1

CLASS org.biojava.nbio.structure.align.gui.HelpDialog$2

CLASS org.biojava.nbio.structure.align.gui.JPrintPanel

CLASS org.biojava.nbio.structure.align.gui.MemoryMonitor

CLASS org.biojava.nbio.structure.align.gui.MemoryMonitor$1

CLASS org.biojava.nbio.structure.align.gui.MemoryMonitor$2

CLASS org.biojava.nbio.structure.align.gui.MemoryMonitor$Surface

CLASS org.biojava.nbio.structure.align.gui.MemoryMonitor$Surface$1

CLASS org.biojava.nbio.structure.align.gui.MenuCreator

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$1

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$10

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$11

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$1MyCloseListener

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$2

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$3

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$4

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$5

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$6

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$7

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$8

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$9

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$DotPlotListener

CLASS org.biojava.nbio.structure.align.gui.MenuCreator$DotPlotListener$1

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentCalc

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$1

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$2

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$3

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$4

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$5

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$6

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentGUI$7

CLASS org.biojava.nbio.structure.align.gui.MultipleAlignmentJmolDisplay

CLASS org.biojava.nbio.structure.align.gui.MyAction

CLASS org.biojava.nbio.structure.align.gui.MyAlignmentLoadListener

CLASS org.biojava.nbio.structure.align.gui.MyComparator

CLASS org.biojava.nbio.structure.align.gui.MyDistMaxListener

CLASS org.biojava.nbio.structure.align.gui.MyDistMaxListener$1

CLASS org.biojava.nbio.structure.align.gui.MyExportListener

CLASS org.biojava.nbio.structure.align.gui.MyOpenPdbFileListener

CLASS org.biojava.nbio.structure.align.gui.MySaveFileListener

CLASS org.biojava.nbio.structure.align.gui.MyTableRowSorter

CLASS org.biojava.nbio.structure.align.gui.ParameterGUI

CLASS org.biojava.nbio.structure.align.gui.ParameterGUI$1

CLASS org.biojava.nbio.structure.align.gui.ParameterGUI$2

CLASS org.biojava.nbio.structure.align.gui.ParameterGUI$3

CLASS org.biojava.nbio.structure.align.gui.ProgressThreadDrawer

CLASS org.biojava.nbio.structure.align.gui.SelectPDBPanel

CLASS org.biojava.nbio.structure.align.gui.ShowPDBIDListener

CLASS org.biojava.nbio.structure.align.gui.StructureAlignmentDisplay

CLASS org.biojava.nbio.structure.align.gui.StructureLoaderThread

CLASS org.biojava.nbio.structure.align.gui.StructureLoaderThread$1

CLASS org.biojava.nbio.structure.align.gui.StructureLoaderThread$2

CLASS org.biojava.nbio.structure.align.gui.SystemInfo

CLASS org.biojava.nbio.structure.align.gui.SystemInfo$1

CLASS org.biojava.nbio.structure.align.gui.SystemInfo$2

CLASS org.biojava.nbio.structure.align.gui.aligpanel.AFPChainCoordManager

CLASS org.biojava.nbio.structure.align.gui.aligpanel.AligPanel

CLASS org.biojava.nbio.structure.align.gui.aligpanel.AligPanelMouseMotionListener

CLASS org.biojava.nbio.structure.align.gui.aligpanel.MultipleAligPanel

CLASS org.biojava.nbio.structure.align.gui.aligpanel.MultipleAligPanelMouseMotionListener

CLASS org.biojava.nbio.structure.align.gui.aligpanel.MultipleAlignmentCoordManager

CLASS org.biojava.nbio.structure.align.gui.aligpanel.MultipleStatusDisplay

CLASS org.biojava.nbio.structure.align.gui.aligpanel.StatusDisplay

CLASS org.biojava.nbio.structure.align.gui.autosuggest.AutoSuggestProvider

CLASS org.biojava.nbio.structure.align.gui.autosuggest.DefaultAutoSuggestProvider

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$1

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$2

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$3

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$4

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$5

CLASS org.biojava.nbio.structure.align.gui.autosuggest.JAutoSuggest$SuggestionFetcher

CLASS org.biojava.nbio.structure.align.gui.autosuggest.SCOPAutoSuggestProvider

CLASS org.biojava.nbio.structure.align.gui.jmol.AbstractAlignmentJmol

CLASS org.biojava.nbio.structure.align.gui.jmol.AtomInfo

CLASS org.biojava.nbio.structure.align.gui.jmol.AtomInfoParser

CLASS org.biojava.nbio.structure.align.gui.jmol.JmolPanel

CLASS org.biojava.nbio.structure.align.gui.jmol.JmolTools

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$1

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$2

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$3

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$4

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$5

CLASS org.biojava.nbio.structure.align.gui.jmol.MultipleAlignmentJmol$6

CLASS org.biojava.nbio.structure.align.gui.jmol.MyJmolStatusListener

CLASS org.biojava.nbio.structure.align.gui.jmol.RasmolCommandListener

CLASS org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol

CLASS org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol$1

CLASS org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol$2

CLASS org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol$3

CLASS org.biojava.nbio.structure.align.helper.AligMatEl

CLASS org.biojava.nbio.structure.align.helper.AlignTools

CLASS org.biojava.nbio.structure.align.helper.GapArray

CLASS org.biojava.nbio.structure.align.helper.IdxComparator

CLASS org.biojava.nbio.structure.align.helper.IndexPair

CLASS org.biojava.nbio.structure.align.helper.JointFragments

CLASS org.biojava.nbio.structure.align.model.AFP

CLASS org.biojava.nbio.structure.align.model.AFPChain

CLASS org.biojava.nbio.structure.align.model.AfpChainWriter

CLASS org.biojava.nbio.structure.align.multiple.AbstractScoresCache

CLASS org.biojava.nbio.structure.align.multiple.Block

CLASS org.biojava.nbio.structure.align.multiple.BlockImpl

CLASS org.biojava.nbio.structure.align.multiple.BlockSet

CLASS org.biojava.nbio.structure.align.multiple.BlockSetImpl

CLASS org.biojava.nbio.structure.align.multiple.MultipleAlignment

CLASS org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsemble

CLASS org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsembleImpl

CLASS org.biojava.nbio.structure.align.multiple.MultipleAlignmentImpl

CLASS org.biojava.nbio.structure.align.multiple.ScoresCache

CLASS org.biojava.nbio.structure.align.multiple.mc.MultipleMcMain

CLASS org.biojava.nbio.structure.align.multiple.mc.MultipleMcOptimizer

CLASS org.biojava.nbio.structure.align.multiple.mc.MultipleMcParameters

CLASS org.biojava.nbio.structure.align.multiple.util.CoreSuperimposer

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentScorer

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentTools

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentTools$1

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentWriter

CLASS org.biojava.nbio.structure.align.multiple.util.MultipleSuperimposer

CLASS org.biojava.nbio.structure.align.multiple.util.ReferenceSuperimposer

CLASS org.biojava.nbio.structure.align.pairwise.AligNPE

CLASS org.biojava.nbio.structure.align.pairwise.Alignable

CLASS org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener

CLASS org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener$1

CLASS org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener$2

CLASS org.biojava.nbio.structure.align.pairwise.AlignmentResult

CLASS org.biojava.nbio.structure.align.pairwise.AltAligComparator

CLASS org.biojava.nbio.structure.align.pairwise.AlternativeAlignment

CLASS org.biojava.nbio.structure.align.pairwise.FragmentJoiner

CLASS org.biojava.nbio.structure.align.pairwise.FragmentPair

CLASS org.biojava.nbio.structure.align.pairwise.Gotoh

CLASS org.biojava.nbio.structure.align.pairwise.JointFragmentsComparator

CLASS org.biojava.nbio.structure.align.pairwise.StrCompAlignment

CLASS org.biojava.nbio.structure.align.seq.SmithWaterman3DParameters

CLASS org.biojava.nbio.structure.align.seq.SmithWaterman3Daligner

CLASS org.biojava.nbio.structure.align.seq.SmithWatermanUserArgumentProcessor

CLASS org.biojava.nbio.structure.align.seq.SmithWatermanUserArgumentProcessor$SmithWatermanStartupParams

CLASS org.biojava.nbio.structure.align.util.AFPAlignmentDisplay

CLASS org.biojava.nbio.structure.align.util.AFPChainScorer

CLASS org.biojava.nbio.structure.align.util.AlignmentTools

CLASS org.biojava.nbio.structure.align.util.AlignmentTools$IdentityMap

CLASS org.biojava.nbio.structure.align.util.AtomCache

CLASS org.biojava.nbio.structure.align.util.CacheFactory

CLASS org.biojava.nbio.structure.align.util.CliTools

CLASS org.biojava.nbio.structure.align.util.CollectionTools

CLASS org.biojava.nbio.structure.align.util.ConfigurationException

CLASS org.biojava.nbio.structure.align.util.HTTPConnectionTools

CLASS org.biojava.nbio.structure.align.util.ResourceManager

CLASS org.biojava.nbio.structure.align.util.RotationAxis

CLASS org.biojava.nbio.structure.align.util.SynchronizedOutFile

CLASS org.biojava.nbio.structure.align.util.URLConnectionTools

CLASS org.biojava.nbio.structure.align.util.UserConfiguration

CLASS org.biojava.nbio.structure.align.webstart.AligUIManager

CLASS org.biojava.nbio.structure.align.webstart.BrowserOpener

CLASS org.biojava.nbio.structure.align.webstart.ConfigXMLHandler

CLASS org.biojava.nbio.structure.align.webstart.JNLPProxy

CLASS org.biojava.nbio.structure.align.webstart.PersistentConfig

CLASS org.biojava.nbio.structure.align.webstart.WebStartDBSearch

CLASS org.biojava.nbio.structure.align.webstart.WebStartDBSearchResults

CLASS org.biojava.nbio.structure.align.webstart.WebStartMain

CLASS org.biojava.nbio.structure.align.webstart.WebStartMain$1

CLASS org.biojava.nbio.structure.align.webstart.WebStartMain$2

CLASS org.biojava.nbio.structure.align.xml.AFPChainFlipper

CLASS org.biojava.nbio.structure.align.xml.AFPChainXMLConverter

CLASS org.biojava.nbio.structure.align.xml.AFPChainXMLParser

CLASS org.biojava.nbio.structure.align.xml.HasResultXMLConverter

CLASS org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLConverter

CLASS org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLParser

CLASS org.biojava.nbio.structure.align.xml.PdbPairXMLConverter

CLASS org.biojava.nbio.structure.align.xml.PdbPairsMessage

CLASS org.biojava.nbio.structure.align.xml.PositionInQueueXMLConverter

CLASS org.biojava.nbio.structure.align.xml.RepresentativeXMLConverter

CLASS org.biojava.nbio.structure.asa.AsaCalculator

CLASS org.biojava.nbio.structure.asa.AsaCalculator$AsaCalcWorker

CLASS org.biojava.nbio.structure.asa.GroupAsa

CLASS org.biojava.nbio.structure.cath.CathCategory

CLASS org.biojava.nbio.structure.cath.CathCategory$1

CLASS org.biojava.nbio.structure.cath.CathDatabase

CLASS org.biojava.nbio.structure.cath.CathDomain

CLASS org.biojava.nbio.structure.cath.CathDomain$1

CLASS org.biojava.nbio.structure.cath.CathFactory

CLASS org.biojava.nbio.structure.cath.CathFragment

CLASS org.biojava.nbio.structure.cath.CathInstallation

CLASS org.biojava.nbio.structure.cath.CathNode

CLASS org.biojava.nbio.structure.cath.CathSegment

CLASS org.biojava.nbio.structure.cluster.Subunit

CLASS org.biojava.nbio.structure.cluster.SubunitCluster

CLASS org.biojava.nbio.structure.cluster.SubunitClusterer

CLASS org.biojava.nbio.structure.cluster.SubunitClustererMethod

CLASS org.biojava.nbio.structure.cluster.SubunitClustererParameters

CLASS org.biojava.nbio.structure.cluster.SubunitExtractor

CLASS org.biojava.nbio.structure.contact.AtomContact

CLASS org.biojava.nbio.structure.contact.AtomContactSet

CLASS org.biojava.nbio.structure.contact.AtomIdentifier

CLASS org.biojava.nbio.structure.contact.BoundingBox

CLASS org.biojava.nbio.structure.contact.BoundingBox$Bound

CLASS org.biojava.nbio.structure.contact.Grid

CLASS org.biojava.nbio.structure.contact.GridCell

CLASS org.biojava.nbio.structure.contact.GroupContact

CLASS org.biojava.nbio.structure.contact.GroupContactSet

CLASS org.biojava.nbio.structure.contact.Pair

CLASS org.biojava.nbio.structure.contact.ResidueIdentifier

CLASS org.biojava.nbio.structure.contact.StructureInterface

CLASS org.biojava.nbio.structure.contact.StructureInterfaceCluster

CLASS org.biojava.nbio.structure.contact.StructureInterfaceList

CLASS org.biojava.nbio.structure.contact.StructureInterfaceList$1

CLASS org.biojava.nbio.structure.domain.AssignmentXMLSerializer

CLASS org.biojava.nbio.structure.domain.DomainProvider

CLASS org.biojava.nbio.structure.domain.DomainProviderFactory

CLASS org.biojava.nbio.structure.domain.LocalProteinDomainParser

CLASS org.biojava.nbio.structure.domain.PDBDomainProvider

CLASS org.biojava.nbio.structure.domain.PDBDomainProvider$1

CLASS org.biojava.nbio.structure.domain.PDPDomain

CLASS org.biojava.nbio.structure.domain.PDPProvider

CLASS org.biojava.nbio.structure.domain.RemoteDomainProvider

CLASS org.biojava.nbio.structure.domain.RemotePDPProvider

CLASS org.biojava.nbio.structure.domain.SerializableCache

CLASS org.biojava.nbio.structure.domain.pdp.ClusterDomains

CLASS org.biojava.nbio.structure.domain.pdp.Cut

CLASS org.biojava.nbio.structure.domain.pdp.CutDomain

CLASS org.biojava.nbio.structure.domain.pdp.CutSites

CLASS org.biojava.nbio.structure.domain.pdp.CutValues

CLASS org.biojava.nbio.structure.domain.pdp.Domain

CLASS org.biojava.nbio.structure.domain.pdp.GetDistanceMatrix

CLASS org.biojava.nbio.structure.domain.pdp.PDPDistanceMatrix

CLASS org.biojava.nbio.structure.domain.pdp.PDPParameters

CLASS org.biojava.nbio.structure.domain.pdp.Segment

CLASS org.biojava.nbio.structure.domain.pdp.SegmentComparator

CLASS org.biojava.nbio.structure.domain.pdp.ShortSegmentRemover

CLASS org.biojava.nbio.structure.ecod.EcodDatabase

CLASS org.biojava.nbio.structure.ecod.EcodDomain

CLASS org.biojava.nbio.structure.ecod.EcodFactory

CLASS org.biojava.nbio.structure.ecod.EcodInstallation

CLASS org.biojava.nbio.structure.ecod.EcodInstallation$EcodParser

CLASS org.biojava.nbio.structure.geometry.CalcPoint

CLASS org.biojava.nbio.structure.geometry.MomentsOfInertia

CLASS org.biojava.nbio.structure.geometry.MomentsOfInertia$SymmetryClass

CLASS org.biojava.nbio.structure.geometry.SuperPosition

CLASS org.biojava.nbio.structure.geometry.SuperPositionQCP

CLASS org.biojava.nbio.structure.geometry.UnitQuaternions

CLASS org.biojava.nbio.structure.gui.BiojavaJmol

CLASS org.biojava.nbio.structure.gui.BiojavaJmol$1

CLASS org.biojava.nbio.structure.gui.BiojavaJmol$2

CLASS org.biojava.nbio.structure.gui.BiojavaJmol$3

CLASS org.biojava.nbio.structure.gui.JMatrixPanel

CLASS org.biojava.nbio.structure.gui.JmolViewerImpl

CLASS org.biojava.nbio.structure.gui.JmolViewerImpl$1

CLASS org.biojava.nbio.structure.gui.JmolViewerImpl$JmolPanel

CLASS org.biojava.nbio.structure.gui.RasmolCommandListener

CLASS org.biojava.nbio.structure.gui.RenderStyle

CLASS org.biojava.nbio.structure.gui.ScaleableMatrixPanel

CLASS org.biojava.nbio.structure.gui.ScaleableMatrixPanel$1

CLASS org.biojava.nbio.structure.gui.ScaleableMatrixPanel$GradientRenderer

CLASS org.biojava.nbio.structure.gui.Selection

CLASS org.biojava.nbio.structure.gui.SelectionImpl

CLASS org.biojava.nbio.structure.gui.SequenceDisplay

CLASS org.biojava.nbio.structure.gui.SequenceDisplay$1

CLASS org.biojava.nbio.structure.gui.StructureViewer

CLASS org.biojava.nbio.structure.gui.WrapLayout

CLASS org.biojava.nbio.structure.gui.events.AlignmentPositionListener

CLASS org.biojava.nbio.structure.gui.events.JmolAlignedPositionListener

CLASS org.biojava.nbio.structure.gui.util.AlignedPosition

CLASS org.biojava.nbio.structure.gui.util.AlignmentCalc

CLASS org.biojava.nbio.structure.gui.util.AlternativeAlignmentFrame

CLASS org.biojava.nbio.structure.gui.util.AlternativeAlignmentFrame$1

CLASS org.biojava.nbio.structure.gui.util.AlternativeAlignmentFrame$2

CLASS org.biojava.nbio.structure.gui.util.ChooseAction

CLASS org.biojava.nbio.structure.gui.util.ChooseDirAction

CLASS org.biojava.nbio.structure.gui.util.CoordManager

CLASS org.biojava.nbio.structure.gui.util.JButtonTableCellRenderer

CLASS org.biojava.nbio.structure.gui.util.JTableDataButtonModel

CLASS org.biojava.nbio.structure.gui.util.JTableMouseButtonListener

CLASS org.biojava.nbio.structure.gui.util.MatrixMouseListener

CLASS org.biojava.nbio.structure.gui.util.MenuCreator

CLASS org.biojava.nbio.structure.gui.util.MenuCreator$1

CLASS org.biojava.nbio.structure.gui.util.MenuCreator$2

CLASS org.biojava.nbio.structure.gui.util.MenuCreator$3

CLASS org.biojava.nbio.structure.gui.util.MenuCreator$4

CLASS org.biojava.nbio.structure.gui.util.MenuCreator$5

CLASS org.biojava.nbio.structure.gui.util.MyButtonMouseListener

CLASS org.biojava.nbio.structure.gui.util.PDBDirPanel

CLASS org.biojava.nbio.structure.gui.util.PDBServerPanel

CLASS org.biojava.nbio.structure.gui.util.PDBUploadPanel

CLASS org.biojava.nbio.structure.gui.util.ScopInstallationInstance

CLASS org.biojava.nbio.structure.gui.util.ScopSelectPanel

CLASS org.biojava.nbio.structure.gui.util.SelectMultiplePanel

CLASS org.biojava.nbio.structure.gui.util.SequenceMouseListener

CLASS org.biojava.nbio.structure.gui.util.SequenceScalePanel

CLASS org.biojava.nbio.structure.gui.util.StructurePairSelector

CLASS org.biojava.nbio.structure.gui.util.color.ColorInterpolator

CLASS org.biojava.nbio.structure.gui.util.color.ColorUtils

CLASS org.biojava.nbio.structure.gui.util.color.ContinuousColorMapper

CLASS org.biojava.nbio.structure.gui.util.color.ContinuousColorMapperTransform

CLASS org.biojava.nbio.structure.gui.util.color.DefaultMatrixMapper

CLASS org.biojava.nbio.structure.gui.util.color.GradientMapper

CLASS org.biojava.nbio.structure.gui.util.color.GradientPanel

CLASS org.biojava.nbio.structure.gui.util.color.HSVColorSpace

CLASS org.biojava.nbio.structure.gui.util.color.LinearColorInterpolator

CLASS org.biojava.nbio.structure.gui.util.color.LinearColorInterpolator$1

CLASS org.biojava.nbio.structure.gui.util.color.LinearColorInterpolator$InterpolationDirection

CLASS org.biojava.nbio.structure.gui.util.color.LogColorMapper

CLASS org.biojava.nbio.structure.gui.util.color.SqrtColorMapper

CLASS org.biojava.nbio.structure.io.BondMaker

CLASS org.biojava.nbio.structure.io.CAConverter

CLASS org.biojava.nbio.structure.io.ChargeAdder

CLASS org.biojava.nbio.structure.io.CompoundFinder

CLASS org.biojava.nbio.structure.io.CompoundFinder$1

CLASS org.biojava.nbio.structure.io.EntityFinder

CLASS org.biojava.nbio.structure.io.EntityFinder$1

CLASS org.biojava.nbio.structure.io.FastaAFPChainConverter

CLASS org.biojava.nbio.structure.io.FastaStructureParser

CLASS org.biojava.nbio.structure.io.FileConvert

CLASS org.biojava.nbio.structure.io.FileParsingParameters

CLASS org.biojava.nbio.structure.io.GroupToSDF

CLASS org.biojava.nbio.structure.io.LocalPDBDirectory

CLASS org.biojava.nbio.structure.io.LocalPDBDirectory$1

CLASS org.biojava.nbio.structure.io.LocalPDBDirectory$FetchBehavior

CLASS org.biojava.nbio.structure.io.LocalPDBDirectory$ObsoleteBehavior

CLASS org.biojava.nbio.structure.io.MMCIFFileReader

CLASS org.biojava.nbio.structure.io.PDBBioAssemblyParser

CLASS org.biojava.nbio.structure.io.PDBFileParser

CLASS org.biojava.nbio.structure.io.PDBFileParser$1

CLASS org.biojava.nbio.structure.io.PDBFileParser$JournalParser

CLASS org.biojava.nbio.structure.io.PDBFileReader

CLASS org.biojava.nbio.structure.io.PDBParseException

CLASS org.biojava.nbio.structure.io.SSBondImpl

CLASS org.biojava.nbio.structure.io.SandboxStyleStructureProvider

CLASS org.biojava.nbio.structure.io.SeqRes2AtomAligner

CLASS org.biojava.nbio.structure.io.StructureIOFile

CLASS org.biojava.nbio.structure.io.StructureProvider

CLASS org.biojava.nbio.structure.io.StructureSequenceMatcher

CLASS org.biojava.nbio.structure.io.mmcif.AllChemCompProvider

CLASS org.biojava.nbio.structure.io.mmcif.ChemCompConsumer

CLASS org.biojava.nbio.structure.io.mmcif.ChemCompGroupFactory

CLASS org.biojava.nbio.structure.io.mmcif.ChemCompProvider

CLASS org.biojava.nbio.structure.io.mmcif.ChemicalComponentDictionary

CLASS org.biojava.nbio.structure.io.mmcif.DownloadChemCompProvider

CLASS org.biojava.nbio.structure.io.mmcif.DownloadChemCompProvider$1

CLASS org.biojava.nbio.structure.io.mmcif.MMCIFFileTools

CLASS org.biojava.nbio.structure.io.mmcif.MMcifConsumer

CLASS org.biojava.nbio.structure.io.mmcif.MMcifParser

CLASS org.biojava.nbio.structure.io.mmcif.MetalBondConsumer

CLASS org.biojava.nbio.structure.io.mmcif.MetalBondParser

CLASS org.biojava.nbio.structure.io.mmcif.ReducedChemCompProvider

CLASS org.biojava.nbio.structure.io.mmcif.SimpleMMcifConsumer

CLASS org.biojava.nbio.structure.io.mmcif.SimpleMMcifParser

CLASS org.biojava.nbio.structure.io.mmcif.ZipChemCompProvider

CLASS org.biojava.nbio.structure.io.mmcif.ZipChemCompProvider$1

CLASS org.biojava.nbio.structure.io.mmcif.chem.ChemCompTools

CLASS org.biojava.nbio.structure.io.mmcif.chem.MetalBondDistance

CLASS org.biojava.nbio.structure.io.mmcif.chem.PolymerType

CLASS org.biojava.nbio.structure.io.mmcif.chem.ResidueType

CLASS org.biojava.nbio.structure.io.mmcif.model.AbstractBean

CLASS org.biojava.nbio.structure.io.mmcif.model.AtomSite

CLASS org.biojava.nbio.structure.io.mmcif.model.AuditAuthor

CLASS org.biojava.nbio.structure.io.mmcif.model.CIFLabel

CLASS org.biojava.nbio.structure.io.mmcif.model.Cell

CLASS org.biojava.nbio.structure.io.mmcif.model.ChemComp

CLASS org.biojava.nbio.structure.io.mmcif.model.ChemCompAtom

CLASS org.biojava.nbio.structure.io.mmcif.model.ChemCompBond

CLASS org.biojava.nbio.structure.io.mmcif.model.ChemCompDescriptor

CLASS org.biojava.nbio.structure.io.mmcif.model.DatabasePDBremark

CLASS org.biojava.nbio.structure.io.mmcif.model.DatabasePDBrev

CLASS org.biojava.nbio.structure.io.mmcif.model.DatabasePdbrevRecord

CLASS org.biojava.nbio.structure.io.mmcif.model.Entity

CLASS org.biojava.nbio.structure.io.mmcif.model.EntityPoly

CLASS org.biojava.nbio.structure.io.mmcif.model.EntityPolySeq

CLASS org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen

CLASS org.biojava.nbio.structure.io.mmcif.model.EntitySrcNat

CLASS org.biojava.nbio.structure.io.mmcif.model.EntitySrcSyn

CLASS org.biojava.nbio.structure.io.mmcif.model.Exptl

CLASS org.biojava.nbio.structure.io.mmcif.model.IgnoreField

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxChemCompDescriptor

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxChemCompIdentifier

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxEntityNonPoly

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxNonPolyScheme

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxPolySeqScheme

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssembly

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssemblyGen

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssemblyGenXMLContainer

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssemblyXMLContainer

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructOperList

CLASS org.biojava.nbio.structure.io.mmcif.model.PdbxStructOperListXMLContainer

CLASS org.biojava.nbio.structure.io.mmcif.model.Refine

CLASS org.biojava.nbio.structure.io.mmcif.model.Struct

CLASS org.biojava.nbio.structure.io.mmcif.model.StructAsym

CLASS org.biojava.nbio.structure.io.mmcif.model.StructConn

CLASS org.biojava.nbio.structure.io.mmcif.model.StructKeywords

CLASS org.biojava.nbio.structure.io.mmcif.model.StructNcsOper

CLASS org.biojava.nbio.structure.io.mmcif.model.StructRef

CLASS org.biojava.nbio.structure.io.mmcif.model.StructRefSeq

CLASS org.biojava.nbio.structure.io.mmcif.model.StructRefSeqDif

CLASS org.biojava.nbio.structure.io.mmcif.model.StructSite

CLASS org.biojava.nbio.structure.io.mmcif.model.StructSiteGen

CLASS org.biojava.nbio.structure.io.mmcif.model.Symmetry

CLASS org.biojava.nbio.structure.io.mmtf.MmtfActions

CLASS org.biojava.nbio.structure.io.mmtf.MmtfStructureReader

CLASS org.biojava.nbio.structure.io.mmtf.MmtfStructureWriter

CLASS org.biojava.nbio.structure.io.mmtf.MmtfSummaryDataBean

CLASS org.biojava.nbio.structure.io.mmtf.MmtfUtils

CLASS org.biojava.nbio.structure.io.sifts.SiftsChainEntry

CLASS org.biojava.nbio.structure.io.sifts.SiftsChainToUniprotMapping

CLASS org.biojava.nbio.structure.io.sifts.SiftsEntity

CLASS org.biojava.nbio.structure.io.sifts.SiftsMappingProvider

CLASS org.biojava.nbio.structure.io.sifts.SiftsResidue

CLASS org.biojava.nbio.structure.io.sifts.SiftsSegment

CLASS org.biojava.nbio.structure.io.sifts.SiftsXMLParser

CLASS org.biojava.nbio.structure.io.util.FileDownloadUtils

CLASS org.biojava.nbio.structure.io.util.PDBTemporaryStorageUtils

CLASS org.biojava.nbio.structure.io.util.PDBTemporaryStorageUtils$LinkRecord

CLASS org.biojava.nbio.structure.jama.CholeskyDecomposition

CLASS org.biojava.nbio.structure.jama.EigenvalueDecomposition

CLASS org.biojava.nbio.structure.jama.LUDecomposition

CLASS org.biojava.nbio.structure.jama.Maths

CLASS org.biojava.nbio.structure.jama.Matrix

CLASS org.biojava.nbio.structure.jama.QRDecomposition

CLASS org.biojava.nbio.structure.jama.SingularValueDecomposition

CLASS org.biojava.nbio.structure.math.SparseSquareMatrix

CLASS org.biojava.nbio.structure.math.SparseVector

CLASS org.biojava.nbio.structure.math.SymbolTable

CLASS org.biojava.nbio.structure.quaternary.BioAssemblyInfo

CLASS org.biojava.nbio.structure.quaternary.BioAssemblyTools

CLASS org.biojava.nbio.structure.quaternary.BioAssemblyTools$1

CLASS org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder

CLASS org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder$1

CLASS org.biojava.nbio.structure.quaternary.BiologicalAssemblyTransformation

CLASS org.biojava.nbio.structure.quaternary.CartesianProduct

CLASS org.biojava.nbio.structure.quaternary.OperatorResolver

CLASS org.biojava.nbio.structure.quaternary.OrderedPair

CLASS org.biojava.nbio.structure.quaternary.io.BioUnitDataProvider

CLASS org.biojava.nbio.structure.quaternary.io.BioUnitDataProviderFactory

CLASS org.biojava.nbio.structure.quaternary.io.MmCifBiolAssemblyProvider

CLASS org.biojava.nbio.structure.quaternary.io.MmCifPDBBiolAssemblyProvider

CLASS org.biojava.nbio.structure.quaternary.io.PDBBioUnitDataProvider

CLASS org.biojava.nbio.structure.quaternary.io.RawBioUnitDataProvider

CLASS org.biojava.nbio.structure.quaternary.io.RemoteBioUnitDataProvider

CLASS org.biojava.nbio.structure.quaternary.io.RemoteRawBioUnitDataProvider

CLASS org.biojava.nbio.structure.rcsb.GetRepresentatives

CLASS org.biojava.nbio.structure.rcsb.PdbIdLists

CLASS org.biojava.nbio.structure.rcsb.RCSBDescription

CLASS org.biojava.nbio.structure.rcsb.RCSBDescriptionFactory

CLASS org.biojava.nbio.structure.rcsb.RCSBLigand

CLASS org.biojava.nbio.structure.rcsb.RCSBLigands

CLASS org.biojava.nbio.structure.rcsb.RCSBLigandsFactory

CLASS org.biojava.nbio.structure.rcsb.RCSBMacromolecule

CLASS org.biojava.nbio.structure.rcsb.RCSBPolymer

CLASS org.biojava.nbio.structure.rcsb.RCSBTaxonomy

CLASS org.biojava.nbio.structure.rcsb.RCSBUpdates

CLASS org.biojava.nbio.structure.rcsb.ReadUtils

CLASS org.biojava.nbio.structure.scop.Astral

CLASS org.biojava.nbio.structure.scop.Astral$AstralSet

CLASS org.biojava.nbio.structure.scop.BerkeleyScopInstallation

CLASS org.biojava.nbio.structure.scop.BerkeleyScopInstallation$BerkeleyScopMirror

CLASS org.biojava.nbio.structure.scop.CachedRemoteScopInstallation

CLASS org.biojava.nbio.structure.scop.LocalScopDatabase

CLASS org.biojava.nbio.structure.scop.RemoteScopInstallation

CLASS org.biojava.nbio.structure.scop.ScopCategory

CLASS org.biojava.nbio.structure.scop.ScopCategory$1

CLASS org.biojava.nbio.structure.scop.ScopDatabase

CLASS org.biojava.nbio.structure.scop.ScopDescription

CLASS org.biojava.nbio.structure.scop.ScopDescription$1

CLASS org.biojava.nbio.structure.scop.ScopDomain

CLASS org.biojava.nbio.structure.scop.ScopFactory

CLASS org.biojava.nbio.structure.scop.ScopIOException

CLASS org.biojava.nbio.structure.scop.ScopInstallation

CLASS org.biojava.nbio.structure.scop.ScopMirror

CLASS org.biojava.nbio.structure.scop.ScopNode

CLASS org.biojava.nbio.structure.scop.server.ListStringWrapper

CLASS org.biojava.nbio.structure.scop.server.ScopDescriptions

CLASS org.biojava.nbio.structure.scop.server.ScopDomains

CLASS org.biojava.nbio.structure.scop.server.ScopNodes

CLASS org.biojava.nbio.structure.scop.server.TreeSetStringWrapper

CLASS org.biojava.nbio.structure.scop.server.XMLUtil

CLASS org.biojava.nbio.structure.secstruc.BetaBridge

CLASS org.biojava.nbio.structure.secstruc.BridgeType

CLASS org.biojava.nbio.structure.secstruc.DSSPParser

CLASS org.biojava.nbio.structure.secstruc.HBond

CLASS org.biojava.nbio.structure.secstruc.Ladder

CLASS org.biojava.nbio.structure.secstruc.SecStrucCalc

CLASS org.biojava.nbio.structure.secstruc.SecStrucCalc$1

CLASS org.biojava.nbio.structure.secstruc.SecStrucCalc$2

CLASS org.biojava.nbio.structure.secstruc.SecStrucElement

CLASS org.biojava.nbio.structure.secstruc.SecStrucGroup

CLASS org.biojava.nbio.structure.secstruc.SecStrucInfo

CLASS org.biojava.nbio.structure.secstruc.SecStrucState

CLASS org.biojava.nbio.structure.secstruc.SecStrucTools

CLASS org.biojava.nbio.structure.secstruc.SecStrucType

CLASS org.biojava.nbio.structure.symmetry.analysis.CalcBioAssemblySymmetry

CLASS org.biojava.nbio.structure.symmetry.analysis.ScanSymmetry

CLASS org.biojava.nbio.structure.symmetry.axis.AxisAligner

CLASS org.biojava.nbio.structure.symmetry.axis.HelixAxisAligner

CLASS org.biojava.nbio.structure.symmetry.axis.RotationAxisAligner

CLASS org.biojava.nbio.structure.symmetry.core.AxisAligner

CLASS org.biojava.nbio.structure.symmetry.core.C2RotationSolver

CLASS org.biojava.nbio.structure.symmetry.core.ChainClusterer

CLASS org.biojava.nbio.structure.symmetry.core.ClusterMerger

CLASS org.biojava.nbio.structure.symmetry.core.ClusterProteinChains

CLASS org.biojava.nbio.structure.symmetry.core.HelicalRepeatUnit

CLASS org.biojava.nbio.structure.symmetry.core.Helix

CLASS org.biojava.nbio.structure.symmetry.core.HelixAxisAligner

CLASS org.biojava.nbio.structure.symmetry.core.HelixExtender

CLASS org.biojava.nbio.structure.symmetry.core.HelixLayers

CLASS org.biojava.nbio.structure.symmetry.core.HelixSolver

CLASS org.biojava.nbio.structure.symmetry.core.PairwiseAlignment

CLASS org.biojava.nbio.structure.symmetry.core.PermutationGroup

CLASS org.biojava.nbio.structure.symmetry.core.ProteinChainExtractor

CLASS org.biojava.nbio.structure.symmetry.core.ProteinSequenceClusterer

CLASS org.biojava.nbio.structure.symmetry.core.ProteinSequenceClusterer$1

CLASS org.biojava.nbio.structure.symmetry.core.QuatSuperpositionScorer

CLASS org.biojava.nbio.structure.symmetry.core.QuatSymmetryDetector

CLASS org.biojava.nbio.structure.symmetry.core.QuatSymmetryParameters

CLASS org.biojava.nbio.structure.symmetry.core.QuatSymmetryResults

CLASS org.biojava.nbio.structure.symmetry.core.QuatSymmetryScores

CLASS org.biojava.nbio.structure.symmetry.core.QuatSymmetrySolver

CLASS org.biojava.nbio.structure.symmetry.core.Rotation

CLASS org.biojava.nbio.structure.symmetry.core.RotationAxisAligner

CLASS org.biojava.nbio.structure.symmetry.core.RotationGroup

CLASS org.biojava.nbio.structure.symmetry.core.RotationGroup$1

CLASS org.biojava.nbio.structure.symmetry.core.RotationSolver

CLASS org.biojava.nbio.structure.symmetry.core.SequenceAlignmentCluster

CLASS org.biojava.nbio.structure.symmetry.core.SubunitGraph

CLASS org.biojava.nbio.structure.symmetry.core.Subunits

CLASS org.biojava.nbio.structure.symmetry.core.SymmetryPerceptionMethod

CLASS org.biojava.nbio.structure.symmetry.core.SystematicSolver

CLASS org.biojava.nbio.structure.symmetry.core.UniqueSequenceList

CLASS org.biojava.nbio.structure.symmetry.geometry.DistanceBox

CLASS org.biojava.nbio.structure.symmetry.geometry.IcosahedralSampler

CLASS org.biojava.nbio.structure.symmetry.geometry.Icosahedron

CLASS org.biojava.nbio.structure.symmetry.geometry.MomentsOfInertia

CLASS org.biojava.nbio.structure.symmetry.geometry.MomentsOfInertia$SymmetryClass

CLASS org.biojava.nbio.structure.symmetry.geometry.Octahedron

CLASS org.biojava.nbio.structure.symmetry.geometry.Permute

CLASS org.biojava.nbio.structure.symmetry.geometry.Polyhedron

CLASS org.biojava.nbio.structure.symmetry.geometry.Prism

CLASS org.biojava.nbio.structure.symmetry.geometry.RectangularPrism

CLASS org.biojava.nbio.structure.symmetry.geometry.SphereSampler

CLASS org.biojava.nbio.structure.symmetry.geometry.SuperPosition

CLASS org.biojava.nbio.structure.symmetry.geometry.SuperPositionQCP

CLASS org.biojava.nbio.structure.symmetry.geometry.Tetrahedron

CLASS org.biojava.nbio.structure.symmetry.gui.ProgressThreadDrawer

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryCalc

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryDisplay

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryGui

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryGui$1

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryGui$2

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryGui$3

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryGui$4

CLASS org.biojava.nbio.structure.symmetry.gui.SymmetryListener

CLASS org.biojava.nbio.structure.symmetry.internal.AngleOrderDetectorPlus

CLASS org.biojava.nbio.structure.symmetry.internal.CESymmParameters

CLASS org.biojava.nbio.structure.symmetry.internal.CESymmParameters$OrderDetectorMethod

CLASS org.biojava.nbio.structure.symmetry.internal.CESymmParameters$RefineMethod

CLASS org.biojava.nbio.structure.symmetry.internal.CESymmParameters$SymmetryType

CLASS org.biojava.nbio.structure.symmetry.internal.CeSymm

CLASS org.biojava.nbio.structure.symmetry.internal.CeSymm$1

CLASS org.biojava.nbio.structure.symmetry.internal.CeSymm$2

CLASS org.biojava.nbio.structure.symmetry.internal.CeSymmIterative

CLASS org.biojava.nbio.structure.symmetry.internal.CeSymmResult

CLASS org.biojava.nbio.structure.symmetry.internal.GraphComponentOrderDetector

CLASS org.biojava.nbio.structure.symmetry.internal.GraphComponentRefiner

CLASS org.biojava.nbio.structure.symmetry.internal.OrderDetector

CLASS org.biojava.nbio.structure.symmetry.internal.RefinerFailedException

CLASS org.biojava.nbio.structure.symmetry.internal.ResidueGroup

CLASS org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector

CLASS org.biojava.nbio.structure.symmetry.internal.SequenceFunctionRefiner

CLASS org.biojava.nbio.structure.symmetry.internal.SymmOptimizer

CLASS org.biojava.nbio.structure.symmetry.internal.SymmetryAxes

CLASS org.biojava.nbio.structure.symmetry.internal.SymmetryAxes$Axis

CLASS org.biojava.nbio.structure.symmetry.internal.SymmetryRefiner

CLASS org.biojava.nbio.structure.symmetry.jmolScript.ColorConverter

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorC1

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorCn

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorDn

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorH

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorI

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorO

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

CLASS org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorT

CLASS org.biojava.nbio.structure.symmetry.misc.ChainSignature

CLASS org.biojava.nbio.structure.symmetry.misc.ProteinComplexSignature

CLASS org.biojava.nbio.structure.symmetry.utils.BlastClustReader

CLASS org.biojava.nbio.structure.symmetry.utils.CombinationGenerator

CLASS org.biojava.nbio.structure.symmetry.utils.PermutationGenerator

CLASS org.biojava.nbio.structure.symmetry.utils.PowerSet

CLASS org.biojava.nbio.structure.symmetry.utils.SymmetryTools

CLASS org.biojava.nbio.structure.validation.AngleOutlier

CLASS org.biojava.nbio.structure.validation.BondOutlier

CLASS org.biojava.nbio.structure.validation.Clash

CLASS org.biojava.nbio.structure.validation.Entry

CLASS org.biojava.nbio.structure.validation.ModelledSubgroup

CLASS org.biojava.nbio.structure.validation.MogAngleOutlier

CLASS org.biojava.nbio.structure.validation.MogBondOutlier

CLASS org.biojava.nbio.structure.validation.ObjectFactory

CLASS org.biojava.nbio.structure.validation.Program

CLASS org.biojava.nbio.structure.validation.Programs

CLASS org.biojava.nbio.structure.validation.SymmClash

CLASS org.biojava.nbio.structure.validation.WwPDBValidationInformation

CLASS org.biojava.nbio.structure.xtal.BravaisLattice

CLASS org.biojava.nbio.structure.xtal.CrystalBuilder

CLASS org.biojava.nbio.structure.xtal.CrystalCell

CLASS org.biojava.nbio.structure.xtal.CrystalTransform

CLASS org.biojava.nbio.structure.xtal.SpaceGroup

CLASS org.biojava.nbio.structure.xtal.SymoplibParser

CLASS org.biojava.nbio.structure.xtal.TransformType

CLASS org.biojava.nbio.structure.xtal.UnitCellBoundingBox

CLASS org.biojava.nbio.structure.xtal.io.SpaceGroupMapAdapter

CLASS org.biojava.nbio.structure.xtal.io.SpaceGroupMapElements

CLASS org.biojava.nbio.structure.xtal.io.SpaceGroupMapRoot

CLASS org.biojava.nbio.structure.xtal.io.TransfAlgebraicAdapter

CLASS org.biojava.nbio.structure.xtal.io.TreeMapSpaceGroupWrapper

CLASS org.biojava.nbio.survival.cox.CoxCC

CLASS org.biojava.nbio.survival.cox.CoxCoefficient

CLASS org.biojava.nbio.survival.cox.CoxHelper

CLASS org.biojava.nbio.survival.cox.CoxInfo

CLASS org.biojava.nbio.survival.cox.CoxMart

CLASS org.biojava.nbio.survival.cox.CoxMethod

CLASS org.biojava.nbio.survival.cox.CoxR

CLASS org.biojava.nbio.survival.cox.CoxScore

CLASS org.biojava.nbio.survival.cox.CoxVariables

CLASS org.biojava.nbio.survival.cox.ResidualsCoxph

CLASS org.biojava.nbio.survival.cox.ResidualsCoxph$Type

CLASS org.biojava.nbio.survival.cox.RiskInfo

CLASS org.biojava.nbio.survival.cox.StrataInfo

CLASS org.biojava.nbio.survival.cox.SurvFitInfo

CLASS org.biojava.nbio.survival.cox.SurvivalInfo

CLASS org.biojava.nbio.survival.cox.SurvivalInfoHelper

CLASS org.biojava.nbio.survival.cox.SurvivalInfoIndex

CLASS org.biojava.nbio.survival.cox.WaldTest

CLASS org.biojava.nbio.survival.cox.WaldTestInfo

CLASS org.biojava.nbio.survival.cox.comparators.CoxComparatorInterface

CLASS org.biojava.nbio.survival.cox.comparators.CoxVariablesOverallModelFitComparator

CLASS org.biojava.nbio.survival.cox.comparators.CoxVariablesVariableComparator

CLASS org.biojava.nbio.survival.cox.comparators.MeanModelComparator

CLASS org.biojava.nbio.survival.cox.comparators.SurvivalInfoComparator

CLASS org.biojava.nbio.survival.cox.comparators.SurvivalInfoValueComparator

CLASS org.biojava.nbio.survival.cox.matrix.Matrix

CLASS org.biojava.nbio.survival.cox.matrix.StdArrayIO

CLASS org.biojava.nbio.survival.cox.stats.AgScore

CLASS org.biojava.nbio.survival.cox.stats.ChiSq

CLASS org.biojava.nbio.survival.cox.stats.Cholesky2

CLASS org.biojava.nbio.survival.cox.stats.Chsolve2

CLASS org.biojava.nbio.survival.data.ChangeValue

CLASS org.biojava.nbio.survival.data.CompactCharSequence

CLASS org.biojava.nbio.survival.data.HeaderInfo

CLASS org.biojava.nbio.survival.data.WorkSheet

CLASS org.biojava.nbio.survival.kaplanmeier.figure.CensorStatus

CLASS org.biojava.nbio.survival.kaplanmeier.figure.CensorStatusSelect

CLASS org.biojava.nbio.survival.kaplanmeier.figure.ExpressionFigure

CLASS org.biojava.nbio.survival.kaplanmeier.figure.GroupResults

CLASS org.biojava.nbio.survival.kaplanmeier.figure.KMFigureInfo

CLASS org.biojava.nbio.survival.kaplanmeier.figure.KaplanMeierFigure

CLASS org.biojava.nbio.survival.kaplanmeier.figure.KaplanMeierFigure$PlotInfo

CLASS org.biojava.nbio.survival.kaplanmeier.figure.NumbersAtRiskPanel

CLASS org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM

CLASS org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM$ConfLower

CLASS org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM$ConfType

CLASS org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM$Error

CLASS org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM$Method

CLASS org.biojava.nbio.survival.kaplanmeier.metadata.ClinicalMetaDataOutcome

CLASS org.biojava.nbio.survival.kaplanmeier.metadata.DiscreteQuantizerInterface

CLASS org.biojava.nbio.survival.kaplanmeier.metadata.MeanQuantizer

CLASS org.biojava.nbio.survival.kaplanmeier.metadata.MetaDataInfo

CLASS org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentOutputProperties

CLASS org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentProperties

CLASS org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentService

CLASS org.biojava.nbio.ws.alignment.qblast.BlastAlignmentParameterEnum

CLASS org.biojava.nbio.ws.alignment.qblast.BlastJob

CLASS org.biojava.nbio.ws.alignment.qblast.BlastMatrixEnum

CLASS org.biojava.nbio.ws.alignment.qblast.BlastOutputAlignmentFormatEnum

CLASS org.biojava.nbio.ws.alignment.qblast.BlastOutputFormatEnum

CLASS org.biojava.nbio.ws.alignment.qblast.BlastOutputParameterEnum

CLASS org.biojava.nbio.ws.alignment.qblast.BlastProgramEnum

CLASS org.biojava.nbio.ws.alignment.qblast.MapToStringTransformer

CLASS org.biojava.nbio.ws.alignment.qblast.NCBIQBlastAlignmentProperties

CLASS org.biojava.nbio.ws.alignment.qblast.NCBIQBlastAlignmentProperties$1

CLASS org.biojava.nbio.ws.alignment.qblast.NCBIQBlastOutputProperties

CLASS org.biojava.nbio.ws.alignment.qblast.NCBIQBlastService

CLASS org.biojava.nbio.ws.hmmer.HmmerDomain

CLASS org.biojava.nbio.ws.hmmer.HmmerResult

CLASS org.biojava.nbio.ws.hmmer.HmmerScan

CLASS org.biojava.nbio.ws.hmmer.RemoteHmmerScan

CLASS org.biojava.spark.data.AtomContactRDD

CLASS org.biojava.spark.data.AtomDataRDD

CLASS org.biojava.spark.data.ChainDataRDD

CLASS org.biojava.spark.data.GroupDataRDD

CLASS org.biojava.spark.function.AlignmentTools

CLASS org.biojava.spark.function.BuildUndirectedGraph

CLASS org.biojava.spark.function.FlatMapCluster

CLASS org.biojava.spark.function.GetSubsetOfSequences

CLASS org.biojava.spark.function.PairwiseSequenceComparison

CLASS org.biojava.spark.function.PrintClusterInfo

CLASS org.biojava.spark.function.RandomKeyAssigner

CLASS org.biojava.spark.graph.ShowGraph

CLASS org.biojava.spark.graph.ShowGraph$1

CLASS org.biojava.spark.graph.ShowGraph$MyEdge

CLASS org.biojava.spark.graph.WeightedGraph

CLASS org.biojava.spark.mappers.CalculateContacts

CLASS org.biojava.spark.mappers.CalculateFrequency

CLASS org.biojava.spark.mappers.MapperUtils

CLASS org.biojava.spark.mappers.PairwiseSequenceComparison

CLASS org.biojava.spark.mappers.PdbIdToMmtf

CLASS org.biojava.spark.mappers.StringByteToTextByteWriter

CLASS org.biojava.spark.utils.BiojavaSparkUtils

CLASS org.biojava.spark.utils.CanonNames

CLASS org.biojava.spark.utils.EntryPoint