| POM: |
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.reactome.base</groupId>
<artifactId>reactome-base</artifactId>
<version>2.0.0</version>
<packaging>jar</packaging>
<name>${project.groupId}:${project.artifactId}</name>
<description>Reactome Java API</description>
<url>https://github.com/reactome/CuratorTool</url>
<organization>
<name>Reactome</name>
<url>https://reactome.org</url>
</organization>
<licenses>
<license>
<name>APACHE LICENSE, VERSION 2.0</name>
<url>http://www.apache.org/licenses/LICENSE-2.0</url>
</license>
</licenses>
<developers>
<developer>
<name>Reactome Team</name>
<email>help@reactome.org</email>
<organization>Reactome</organization>
<organizationUrl>https://reactome.org</organizationUrl>
</developer>
</developers>
<scm>
<connection>scm:git:git://github.com/reactome/reactome-base.git</connection>
<developerConnection>scm:git:ssh://github.com/reactome/reactome-base.git</developerConnection>
<url>https://github.com/reactome/reactome-base</url>
<tag>master</tag>
</scm>
<properties>
<!-- dependencies -->
<javax.jnlp.version>1.2</javax.jnlp.version>
<jdom.version>1.1.3</jdom.version>
<mysql.version>5.1.47</mysql.version>
<!-- build -->
<jdk.version>1.8</jdk.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<!-- maven build and plugins -->
<maven.compiler.version>3.8.1</maven.compiler.version>
<maven.gpg.version>3.2.8</maven.gpg.version>
<maven.javadoc.version>3.11.2</maven.javadoc.version>
<maven.release.version>3.3.1</maven.release.version>
<maven.source.version>3.3.1</maven.source.version>
<maven.surefire.version>3.0.0-M5</maven.surefire.version>
<maven.tidy.version>1.4.0</maven.tidy.version>
<maven.sonatype.central.version>0.8.0</maven.sonatype.central.version>
</properties>
<dependencies>
<dependency>
<groupId>com.github.librepdf</groupId>
<artifactId>openpdf</artifactId>
<version>1.4.2</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>javax.jnlp</groupId>
<artifactId>jnlp</artifactId>
<version>${javax.jnlp.version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>jgraph</groupId>
<artifactId>jgraph</artifactId>
<version>5.13.0.0</version>
</dependency>
<dependency>
<groupId>org.apache.xmlgraphics</groupId>
<artifactId>batik-all</artifactId>
<version>1.11</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>2.17.1</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>2.17.1</version>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
<version>${jdom.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>${mysql.version}</version>
<scope>runtime</scope>
</dependency>
</dependencies>
<repositories>
<!-- required for javax.jnlp jnlp v1.2 -->
<repository>
<id>freehep.repository</id>
<name>Freehep Repository</name>
<url>https://java.freehep.org/maven2/</url>
</repository>
</repositories>
<build>
<plugins>
<!-- sets the Java compiler version targeted by Maven -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven.compiler.version}</version>
<configuration>
<source>${jdk.version}</source>
<target>${jdk.version}</target>
</configuration>
</plugin>
<!-- creates jar file containing JavaDocs for the project-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>${maven.javadoc.version}</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
<configuration>
<additionalOptions>-Xdoclint:all -Xdoclint:-missing</additionalOptions>
<additionalJOptions>
<additionalJOption>-Xdoclint:all</additionalJOption>
<additionalJOption>-Xdoclint:-missing</additionalJOption>
</additionalJOptions>
<doclint>all,-missing</doclint>
</configuration>
</plugin>
<!-- creates jar file containing source (*.java) files for the project-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>${maven.source.version}</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- signs the artifacts (i.e. POM file, JavaDoc, Source, and Class jars) with GPG program -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>${maven.gpg.version}</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- executes unit tests -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven.surefire.version}</version>
</plugin>
<!-- allows 'mvn release' command to create a new release of the project https://maven.apache.org/maven-release/maven-release-plugin/ -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>${maven.release.version}</version>
<configuration>
<autoVersionSubmodules>true</autoVersionSubmodules>
<useReleaseProfile>false</useReleaseProfile>
<releaseProfiles>release</releaseProfiles>
<goals>deploy</goals>
<tagNameFormat>v@{project.version}</tagNameFormat>
</configuration>
</plugin>
<!-- standardizes layout of pom.xml file -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>tidy-maven-plugin</artifactId>
<version>${maven.tidy.version}</version>
<executions>
<execution>
<id>validate</id>
<phase>validate</phase>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- allows publishing of SNAPSHOTs and releases to Sonatype staging server for Maven Central -->
<plugin>
<groupId>org.sonatype.central</groupId>
<artifactId>central-publishing-maven-plugin</artifactId>
<version>${maven.sonatype.central.version}</version>
<extensions>true</extensions>
<configuration>
<publishingServerId>central</publishingServerId>
</configuration>
</plugin>
</plugins>
</build>
</project>
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