molvec-0.9.8-jar-with-dependencies.jar

<?xml version="1.0" encoding="UTF-8"?>
<project
  xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>gov.nih.ncats</groupId>
  <artifactId>molvec</artifactId>
  <packaging>jar</packaging>
  <version>0.9.8</version>
  <name>MolVec</name>


    <url>https://github.com/ncats/molvec</url>
    <description>NCATS (chemical) ocr
        engine that can a way to vectorize
        chemical images into Chemical objects preserving the 2D layout as much as
        possible. </description>
    <organization>
        <name>NIH/NCATS</name>
        <url>https://ncats.nih.gov</url>
    </organization>
    <licenses>
        <license>
            <name>Apache-2.0</name>
            <url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <developers>

        <developer>
            <id>peryeata</id>
            <name>Tyler Peryea</name>
            <email>tyler.peryea@fda.hhs.gov</email>
            <roles>
                <role>architect</role>
                <role>developer</role>
            </roles>
            <timezone>America/New_York</timezone>
        </developer>
        <developer>
            <id>nguyenda</id>
            <name>Dac-Trung Nguyen</name>
            <email>dactrung.nguyen@nih.gov</email>
            <roles>
                <role>architect</role>
                <role>developer</role>
            </roles>
            <timezone>America/New_York</timezone>
        </developer>
        <developer>
            <id>katzelda</id>
            <name>Daniel Katzel</name>
            <email>daniel.katzel@nih.gov</email>
            <roles>
                <role>developer</role>
            </roles>
            <timezone>America/New_York</timezone>
        </developer>
    </developers>

    <scm>
        <url>https://spotlite.nih.gov/ncats/ncats-common</url>
    </scm>

    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>

    <properties>
    <java.version>1.8</java.version>
    <maven.compiler.plugin.version>2.3.2</maven.compiler.plugin.version>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <maven.compiler.source>1.8</maven.compiler.source>
    <maven.compiler.target>1.8</maven.compiler.target>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <commonsFileuploadVersion>1.2.1</commonsFileuploadVersion>
    <commonsIoVersion>2.3</commonsIoVersion>
    <log4jVersion>1.2.16</log4jVersion>
    <commonsLang3Version>3.1</commonsLang3Version>
    <downloadLabel>Beta</downloadLabel>
    <gae.version>1.6.5</gae.version>
    <deploy.dir>binaries</deploy.dir>
  </properties>
  
<dependencies>
    <dependency>
        <groupId>junit</groupId>
        <artifactId>junit</artifactId>
        <version>4.13.1</version>
        <scope>test</scope>
    </dependency>
    <dependency>
        <groupId>com.twelvemonkeys.imageio</groupId>
        <artifactId>imageio-tiff</artifactId>
        <version>3.6</version>
    </dependency>
    <dependency>
        <groupId>gov.nih.ncats</groupId>
        <artifactId>ncats-common</artifactId>
        <version>0.3.4</version>
    </dependency>
    <dependency>
        <groupId>gov.nih.ncats</groupId>
        <artifactId>ncats-common-cli</artifactId>
        <version>0.9.2</version>
    </dependency>

    <dependency>
        <groupId>gov.nih.ncats</groupId>
        <artifactId>molwitch-cdk</artifactId>
        <version>1.0.1</version>
        <scope>test</scope>
</dependency>
<dependency>
        <groupId>gov.nih.ncats</groupId>
        <artifactId>molwitch-renderer</artifactId>
        <version>1.0</version>
        <scope>test</scope>
</dependency>
<dependency>
    <groupId>com.mortennobel</groupId>
    <artifactId>java-image-scaling</artifactId>
    <version>0.8.6</version>
<scope>test</scope>
</dependency>

</dependencies>

  <build>
      <resources>
          <resource>
              <directory>src/main/java</directory>
              <includes>
                  <include>**/*.html</include>
                  <include>**/*.js</include>
                  <include>**/*.css</include>
                  <include>**/*.png</include>
              </includes>
          </resource>
      </resources>
  	<finalName>${project.artifactId}-${project.version}</finalName>
    <outputDirectory>${deploy.dir}</outputDirectory>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>${maven.compiler.plugin.version}</version>
        <configuration>
          <source>${java.version}</source>
          <target>${java.version}</target>
          <compilerArgument>-proc:none</compilerArgument>
        </configuration>
      </plugin>
<plugin>
    <artifactId>maven-assembly-plugin</artifactId>
    <executions>
      <execution>
        <phase>package</phase>
        <goals>
          <goal>single</goal>
        </goals>
      </execution>
    </executions>

   <configuration>
               <archive>
                  <manifest>
                     <mainClass>gov.nih.ncats.molvec.Main</mainClass>
                  </manifest>
               </archive>
               <descriptorRefs>
                  <descriptorRef>jar-with-dependencies</descriptorRef>
               </descriptorRefs>
            </configuration>
  </plugin>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.5.1</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>2.2.1</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <goals>
                            <goal>jar-no-fork</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
	    <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>3.1.1</version>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                        <configuration>
                            <use>false</use>
                            <use>false</use>
                            <source>1.8</source>
                                <links><link>http://docs.oracle.com/javase/7/docs/api/</link>		                             <link>http://docs.oracle.com/javase/7/docs/api/</link></links>
                            <doclint>none</doclint>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

        </plugins>
    </build>
<profiles>
    <profile>
        <id>ossrh</id>
        <build>
            <plugins>
                <plugin>
                    <groupId>org.sonatype.plugins</groupId>
                    <artifactId>nexus-staging-maven-plugin</artifactId>
                    <version>1.6.7</version>
                    <extensions>true</extensions>
                    <configuration>
                        <serverId>ossrh</serverId>
                        <nexusUrl>https://oss.sonatype.org/</nexusUrl>
                        <autoReleaseAfterClose>true</autoReleaseAfterClose>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-gpg-plugin</artifactId>
                    <version>1.5</version>
                    <executions>
                        <execution>
                            <id>sign-artifacts</id>
                            <phase>verify</phase>
                            <goals>
                                <goal>sign</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-source-plugin</artifactId>
                    <version>2.2.1</version>
                    <executions>
                        <execution>
                            <id>attach-sources</id>
                            <goals>
                                <goal>jar-no-fork</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-javadoc-plugin</artifactId>
                    <version>3.1.1</version>
                    <executions>
                        <execution>
                            <id>attach-javadocs</id>
                            <goals>
                                <goal>jar</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
            </plugins>
        </build>
    </profile>
</profiles>

</project>